Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00287 ATGGCGTTTGCAGGAACCACCCAGAAGTGCATGGCCTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGATTAAACCATTCACTGATTACAGATCTGACTTGCAGCTAAGCAATTACAACTCCTTTGAAGGGGTGCTCTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGTTTAGACAAAAGCTTCGAAGGAACACCAAAGATTGGGAAGCCGGAGAAACCAGCTGATTCTGAGAGACCGACAGCGACCAAGGTTGCAAGCATGTTTGTCGGCACAAAAGACAAATGCCTTGGCTGTAAGAACACAGTGTATCCGACCGAGAAGGTTTCAGTGAATGGAACCCCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATTAGCCCATCAAATTACATTGCCCATGAAGGCCGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAGGGAAGCCATTAA 576 47.74 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKIKPFTDYRSDLQLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPTEKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1269812 1270998 + CmoCh09G002870.1 Cmo09g00287 388289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00287 191 CDD LIM1_SF3 6 80 - -
Cmo09g00287 191 SMART lim_4 121 173 IPR001781 -
Cmo09g00287 191 SMART lim_4 9 73 IPR001781 -
Cmo09g00287 191 ProSiteProfiles LIM domain profile. 120 180 IPR001781 -
Cmo09g00287 191 Pfam LIM domain 10 75 IPR001781 -
Cmo09g00287 191 Pfam LIM domain 122 176 IPR001781 -
Cmo09g00287 191 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 191 - -
Cmo09g00287 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cmo09g00287 191 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cmo09g00287 191 ProSiteProfiles LIM domain profile. 8 80 IPR001781 -
Cmo09g00287 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 187 - -
Cmo09g00287 191 CDD LIM2_SF3 122 182 - -
Cmo09g00287 191 Gene3D Cysteine Rich Protein 116 186 - -
Cmo09g00287 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 88 - -
Cmo09g00287 191 PANTHER OS06G0237300 PROTEIN 1 191 IPR045268 GO:0051015
Cmo09g00287 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 147 - -
Cmo09g00287 191 Gene3D Cysteine Rich Protein 2 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00287 K09377 CSRP; cysteine and glycine-rich protein - csv:101222637 369.777
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00138 Cmo09g00287 CCT
Cmo09g00287 Cmo12g00541 CCT
Cmo05g00138 Cmo09g00287 ECH
Cmo09g00287 Cmo12g00541 ECH
Cmo01g01840 Cmo09g00287 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00287 Cmo-Chr9:1269812 Cmo19g00561 Cmo-Chr19:6430332 1.93E-13 dispersed
Cmo01g01840 Cmo-Chr1:13432555 Cmo09g00287 Cmo-Chr9:1269812 7.07E-117 wgd
Cmo11g01422 Cmo-Chr11:10025478 Cmo09g00287 Cmo-Chr9:1269812 2.14E-102 wgd
Cmo12g00541 Cmo-Chr12:3299159 Cmo09g00287 Cmo-Chr9:1269812 1.89E-117 wgd
Cmo05g00138 Cmo-Chr5:601874 Cmo09g00287 Cmo-Chr9:1269812 1.48E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g643 . . . . . . . . Cmo05g00138 Cmo12g00541 Cma01g01782 Cma09g00294 Car01g01390 Car12g00545 Sed05g2633 Cpe06g00204 . Bhi04g00436 Tan02g1031 Cmetu01g2030 . Hepe08g1339 . Lcy13g2137 Cla08g01627 Cam08g2131 Cec08g1716 Cco08g1838 Clacu08g1817 . Cre08g1600 . . Cone17ag0889 Cone20ag0235 Lsi04g01478 Csa04g02483 . Cme03g02108 . . . Bda01g01625 . . . . Sed01g2723 Cmo01g01840 Cmo09g00287 Cma12g00601 Cma05g00134 Car05g00115 Car09g00248 Cpe11g00115 Cpe02g00224 Bhi09g03223 Tan01g4685 Cmetu07g1130 . Hepe01g1834 Mch11g0367 . Cla05g02110 Cam05g2262 Cec05g2283 Cco05g2324 Clacu05g2259 Cmu05g2121 Cre05g2245 Lsi08g01532 Csa02g01888 Chy07g00193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10337 PF00412 LIM 9.50E-08 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00287 Cmo_Chr09 FPKM 14.646699 15.51793 20.443371 20.024559 14.766166 12.154756 14.242308 16.178135 14.950014 14.34091