Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00292 ATGGCGATGAACGATTTGCCGGTGGAAACTGGATTCTCGTATGGCACAACTCCACGATCTCTGGAGGCAGGAGATTCCCGTGTTGTTCATCATTCTATTCAATTTTTTAAAAAGTGGTTAATTGATCACCCAGAATTTATCTCTAATCCATTTTATGTGGGTGGAGATTCATACTCCGGTATGGTAATTCCGGCTATTGCTCATAAAGTTTCAGAAGAAAATAAGCGTGGTTTATTGTTGTTGGATCTTCAGGGATATATATTGGGAAATCCAGTCACCATTCGTAATTCAAATACCAATTTTCAAATTCCTTATGCTCATAGAATGGCTCTTATATCCGATGAATTATTCGAGTCATTAACCTCTAGTTGCAAGGGAGAGTACGTGAATATTGATCCGAGCAATGTGGATTGTTTAAGACATTATAAAACGTACCAAAAGTGTGTTTCAAATATCGAGAGAGCTTCAATTTTGTTGCCAAAATGTATGTTTATTTCTCCGAAGCAACGAGAAGGTGGAGATCATGGGAGATCGCTATACGACACCTCTGGATTGTCCCTCGAGCCCGAGCCATCGCTTTCTTCTCTCGATTGTCCGACCTATAAATTCAAACTTGCTACTTATTGGGCGAACAACGACCAAGTTCGAAAAGCACTTCACATACGAGAGGGAAGCGTGGGAGAATGGCTGAGATGTAATGTTAGGGACAGTTACAAGTACGATTTCCAGAGTGCTTTTCCTTATCATGTGGACCTTAGTTCTAAAGGCTACCCGTCTTTGATCTATAGCGGGGATCACGATATGATGGTACCGCATATGGACACTGAAGCATGGATTAAAAAATTAAATTACTCTATTGTCGATGAGTGGAGACCTTGGTTTATCCAAAACCAAGTAGCCGGATATACAAGAAGATATGCAAATAATATGACATTTGCAACCATAAAAGGTGGAGGGCACACAGCAGAATACACACAAAAAGAATGCAGTATACTGTTCAGTCGATGGATTAGTGGAGAACCCTTATAG 1029 40.33 MAMNDLPVETGFSYGTTPRSLEAGDSRVVHHSIQFFKKWLIDHPEFISNPFYVGGDSYSGMVIPAIAHKVSEENKRGLLLLDLQGYILGNPVTIRNSNTNFQIPYAHRMALISDELFESLTSSCKGEYVNIDPSNVDCLRHYKTYQKCVSNIERASILLPKCMFISPKQREGGDHGRSLYDTSGLSLEPEPSLSSLDCPTYKFKLATYWANNDQVRKALHIREGSVGEWLRCNVRDSYKYDFQSAFPYHVDLSSKGYPSLIYSGDHDMMVPHMDTEAWIKKLNYSIVDEWRPWFIQNQVAGYTRRYANNMTFATIKGGGHTAEYTQKECSILFSRWISGEPL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1287608 1289555 - CmoCh09G002920.1 Cmo09g00292 388294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00292 342 Pfam Serine carboxypeptidase 5 339 IPR001563 GO:0004185|GO:0006508
Cmo09g00292 342 Gene3D alpha/beta hydrolase 1 341 IPR029058 -
Cmo09g00292 342 SUPERFAMILY alpha/beta-Hydrolases 5 341 IPR029058 -
Cmo09g00292 342 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 5 340 IPR001563 GO:0004185|GO:0006508
Cmo09g00292 342 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 5 340 - -
Cmo09g00292 342 PRINTS Carboxypeptidase C serine protease (S10) family signature 4 14 IPR001563 GO:0004185|GO:0006508
Cmo09g00292 342 PRINTS Carboxypeptidase C serine protease (S10) family signature 39 64 IPR001563 GO:0004185|GO:0006508
Cmo09g00292 342 PRINTS Carboxypeptidase C serine protease (S10) family signature 310 323 IPR001563 GO:0004185|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01835 Cmo09g00292 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00292 Cmo-Chr9:1287608 Cmo09g00298 Cmo-Chr9:1297449 2.62E-103 dispersed
Cmo09g00296 Cmo-Chr9:1293420 Cmo09g00292 Cmo-Chr9:1287608 1.05E-30 dispersed
Cmo09g00292 Cmo-Chr9:1287608 Cmo09g00294 Cmo-Chr9:1290455 1.28E-17 proximal
Cmo09g00292 Cmo-Chr9:1287608 Cmo09g00295 Cmo-Chr9:1292971 1.50E-13 proximal
Cmo01g01835 Cmo-Chr1:13409454 Cmo09g00292 Cmo-Chr9:1287608 2.60E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00292 K16296 - csv:101207623 418.313