Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00300 ATGCCGATGTACCAGCCGGAGCTGGGTGTGGGTGGTGGTGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGCGGCGGTGGGTTCATTTGCGAGGGTGGAACGGCGGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTTGAGAACATAGAGGTTCCTTCGGTTTTCATCTGTCCAATTTCATTGGAGCCAATGCGAGATCCTGTAACGCTTTGTACAGGACAGACCTACGAACGTTCCAACATCATGAAATGGTTTTCTCTCGGCCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATTACTCCTAATAACACTCTTCACCAACTCATTCACAGCTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCAGAGGATGTGCAGGGGAGGGCTCTCGAGCTCTTAGACACATTGAAAAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTCCGCCATGTCGTGGCTTTGAATTCTTCGACCAAGAACACCGTGGAAGACAATGGCGGTCTTGCTTTGATTTCTTCTCTGTTGGGTCCTTTCACATCCCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCAAGGAGAAACCTCGTCCAACCCGCCAAGATTTCGTTAATGGTGGACATGTTAAACGAGGGATCCACAGACACCAAAATCAACTGCACCAGATTGATTCAAACGCTCCTCGATGGGGACGATTGTGGAGCGGACACTGTCTCAGGTCTAAGCCTGGTGGTTGGGTTGTTAAGATTAATCAAAGAAAAACAACACCCAAATGGCGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACAAGTCAAGAACTCAATAGTGAGCATTGGGGCAATCCCACAGTTGGTTGAAATTCTCCCAAATTTCAGCCCCGAATCTTTGGAGCTAGCCCTTCACGTATTGGATTCAGTTTCATCCCTCTCAGACGGAAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAATTTGGTGAAGTTGCTAATGAGAGTGTCGGAGAGCTGCACTCAGCAGGCGTTATCAATCTTATGGGCGGTCTGTAAACTCGCCCCTGAAGAATGTGCATCGCAAGCTGTGGAAGCAGGCTTAGCCGCCAAACTTCTTCTAGTGATTCAGAGCGGCTGCAATCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTGAACTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGAACAATACAATAA 1326 48.72 MPMYQPELGVGGGGQVLDVETAVKDGILGGGGFICEGGTAEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNIMKWFSLGHITCPTTMQELWDDSITPNNTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRHVVALNSSTKNTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIQTLLDGDDCGADTVSGLSLVVGLLRLIKEKQHPNGVLAGLRLLKALCSQEQVKNSIVSIGAIPQLVEILPNFSPESLELALHVLDSVSSLSDGRVALKDCPKTIPNLVKLLMRVSESCTQQALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1303514 1304839 + CmoCh09G003000.1 Cmo09g00300 388302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00300 441 Gene3D - 131 435 IPR011989 -
Cmo09g00300 441 PANTHER WDSAM1 PROTEIN 30 440 IPR045185 GO:0061630
Cmo09g00300 441 SUPERFAMILY ARM repeat 131 424 IPR016024 -
Cmo09g00300 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 30 440 - -
Cmo09g00300 441 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Cmo09g00300 441 CDD RING-Ubox_PUB 61 103 IPR045210 -
Cmo09g00300 441 SUPERFAMILY RING/U-box 51 127 - -
Cmo09g00300 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 130 IPR013083 -
Cmo09g00300 441 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Cmo09g00300 441 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00134 Cmo09g00300 CCT
Cmo09g00300 Cmo12g00545 CCT
Cmo01g01834 Cmo09g00300 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00812 Cmo-Chr7:3753755 Cmo09g00300 Cmo-Chr9:1303514 7.55E-40 dispersed
Cmo09g00300 Cmo-Chr9:1303514 Cmo20g00163 Cmo-Chr20:820835 1.04E-35 dispersed
Cmo01g01834 Cmo-Chr1:13404018 Cmo09g00300 Cmo-Chr9:1303514 0 wgd
Cmo12g00545 Cmo-Chr12:3336364 Cmo09g00300 Cmo-Chr9:1303514 0 wgd
Cmo05g00134 Cmo-Chr5:584134 Cmo09g00300 Cmo-Chr9:1303514 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00300 - - csv:101223113 740.725