Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00300 | ATGCCGATGTACCAGCCGGAGCTGGGTGTGGGTGGTGGTGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGCGGCGGTGGGTTCATTTGCGAGGGTGGAACGGCGGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTTGAGAACATAGAGGTTCCTTCGGTTTTCATCTGTCCAATTTCATTGGAGCCAATGCGAGATCCTGTAACGCTTTGTACAGGACAGACCTACGAACGTTCCAACATCATGAAATGGTTTTCTCTCGGCCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATTACTCCTAATAACACTCTTCACCAACTCATTCACAGCTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCAGAGGATGTGCAGGGGAGGGCTCTCGAGCTCTTAGACACATTGAAAAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTCCGCCATGTCGTGGCTTTGAATTCTTCGACCAAGAACACCGTGGAAGACAATGGCGGTCTTGCTTTGATTTCTTCTCTGTTGGGTCCTTTCACATCCCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCAAGGAGAAACCTCGTCCAACCCGCCAAGATTTCGTTAATGGTGGACATGTTAAACGAGGGATCCACAGACACCAAAATCAACTGCACCAGATTGATTCAAACGCTCCTCGATGGGGACGATTGTGGAGCGGACACTGTCTCAGGTCTAAGCCTGGTGGTTGGGTTGTTAAGATTAATCAAAGAAAAACAACACCCAAATGGCGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACAAGTCAAGAACTCAATAGTGAGCATTGGGGCAATCCCACAGTTGGTTGAAATTCTCCCAAATTTCAGCCCCGAATCTTTGGAGCTAGCCCTTCACGTATTGGATTCAGTTTCATCCCTCTCAGACGGAAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAATTTGGTGAAGTTGCTAATGAGAGTGTCGGAGAGCTGCACTCAGCAGGCGTTATCAATCTTATGGGCGGTCTGTAAACTCGCCCCTGAAGAATGTGCATCGCAAGCTGTGGAAGCAGGCTTAGCCGCCAAACTTCTTCTAGTGATTCAGAGCGGCTGCAATCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTGAACTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGAACAATACAATAA | 1326 | 48.72 | MPMYQPELGVGGGGQVLDVETAVKDGILGGGGFICEGGTAEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNIMKWFSLGHITCPTTMQELWDDSITPNNTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRHVVALNSSTKNTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIQTLLDGDDCGADTVSGLSLVVGLLRLIKEKQHPNGVLAGLRLLKALCSQEQVKNSIVSIGAIPQLVEILPNFSPESLELALHVLDSVSSLSDGRVALKDCPKTIPNLVKLLMRVSESCTQQALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1303514 | 1304839 | + | CmoCh09G003000.1 | Cmo09g00300 | 388302 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00300 | 441 | Gene3D | - | 131 | 435 | IPR011989 | - | |
Cmo09g00300 | 441 | PANTHER | WDSAM1 PROTEIN | 30 | 440 | IPR045185 | GO:0061630 | |
Cmo09g00300 | 441 | SUPERFAMILY | ARM repeat | 131 | 424 | IPR016024 | - | |
Cmo09g00300 | 441 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 30 | 30 | 440 | - | - | |
Cmo09g00300 | 441 | Pfam | U-box domain | 57 | 127 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo09g00300 | 441 | CDD | RING-Ubox_PUB | 61 | 103 | IPR045210 | - | |
Cmo09g00300 | 441 | SUPERFAMILY | RING/U-box | 51 | 127 | - | - | |
Cmo09g00300 | 441 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 130 | IPR013083 | - | |
Cmo09g00300 | 441 | SMART | Ubox_2 | 60 | 123 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo09g00300 | 441 | ProSiteProfiles | U-box domain profile. | 56 | 130 | IPR003613 | GO:0004842|GO:0016567 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00134 | Cmo09g00300 | CCT | |
Cmo09g00300 | Cmo12g00545 | CCT | |
Cmo01g01834 | Cmo09g00300 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00812 | Cmo-Chr7:3753755 | Cmo09g00300 | Cmo-Chr9:1303514 | 7.55E-40 | dispersed | |
Cmo09g00300 | Cmo-Chr9:1303514 | Cmo20g00163 | Cmo-Chr20:820835 | 1.04E-35 | dispersed | |
Cmo01g01834 | Cmo-Chr1:13404018 | Cmo09g00300 | Cmo-Chr9:1303514 | 0 | wgd | |
Cmo12g00545 | Cmo-Chr12:3336364 | Cmo09g00300 | Cmo-Chr9:1303514 | 0 | wgd | |
Cmo05g00134 | Cmo-Chr5:584134 | Cmo09g00300 | Cmo-Chr9:1303514 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00300 | - | - | csv:101223113 | 740.725 |