Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00308 ATGGAAAATCTGTCTCAGTCCTCAGGTGGACAGTTTCGGCCAGTTATCCCAGCACAACAAGGCCAGACGTTCATTTCATCATCTGCCCAACAGTTCCAGTTAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAGGGCCAGCTGGTCAAATCCAGCAACATCAATATCCTCAATCAATACCGCAGTTAGTTCCAAGGCCTGGCCATCCTACCTACATCGCTTCTTCATCCCAGCCTATACAAATGCCTTATGTTCAGACAAGGCCTCTTACTTCTGTCCCACCTCAGTCCCAGCAAAATGTGCCTGCACCAAATAATCATATGCATGGCTTGGGTGCTCATGGACTACCTCTTTCTTCACCATATACCTTCCAGTCAATGTCACAAATGCATGCACCCGTTGGAGTTGGTAATAGCCAACCTTGGCTGTCTTCTGTAAGCCAAACTACAAACACCGTCTCACCGATCGAGCAAGCTAATCAGAACTCTTCAGTTTCTGCCACAAACCCTCAGTCTTCATCTGATTGGCAAGAGCATTCATCAGCTGATGGAAGAAGGTATTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGAGGGCTGATGCATCAACTGTGTGGAAGGAATTTACTGCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACGAAAGAATCAAAGTGGACCATTCCAGAAGAACTGAAGTTGGCTCGTGAGCAGGCTCAGAAAGAAGCTGCCCAAGGAACACAAACAGATATAGCTGCTACAACACCTCAACCTACACCTGCTGTTGGTCTCTCCCATACTGAAACACCAGCAATTTCATCTGTTAACTCCAGCATTTCTCCAACGGTATCTGGGGTTGCATCGAGTCCAGTTCCAGTCACTCCTTTTGTTTCCGTATCCAATTCTCCTTCAGTGGTGGCTTCTGGGTCATTGACCAATACTGGCACTCCCATTGCTTTAACAACTAGTGTGCCAGGAACAGTTTCTTCTCAATCTGTCGCTGCTGCTGGAGGTACCGGTCCTCCTGCTGTGCTCCATGCCAATGCTTCGTCAGTGACTCCTTTCGAAAGCCTTGCATCTCATGATGTCAAAAATTCTGTTGACGGAACTTCTACAGAAGACATCGAGGAAGCAAGGAAGGGAATGGCAGTTGCAGGAAAAGTTAATGAGACCGTTTTAGAGGAAAAATCTGCTGATGATGAACCTTTAATATTTGCCAACAAACTGGAGGCAAAGAATGCATTCAAAGCGCTTCTGGAATCTGTCAACGTAAAATCGGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATGGTGCCTTGAAAACTCTTGGTGAACGGAAGCAAGCATTCCATGAGTATTTAGGACACAGGAAAAAATTGGATGCGGAGGAAAGACGTATAAAACAGAAAAAAGCTCGTGAGGAGTTCACCAAGATGTTGGAAGAGTCCAAGGAACTCACATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAATGATGAACGGTTCAAAGCTGTTGAACGTTCTAGAGACCGGGAGGATCTTTTTGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTGCTGAATATAGGAACTTCCTTGAGTCATGTGATTATATAAAGGTGAACAGCCAGTGGCGTAAAGTACAAGATCGATTGGAAGACGATGAAAGATGCTCACGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGACTTGGAAAAGGAGGAAGAGGAGCAGAAAAAGATACAAAAGGAACGTGTGAGACGAATTGAAAGAAAAAACCGCGACGAATTTCGCAAACTCTTGGATGAACAAATTACTGCTGGTATTCTTACAGCTAAGACTTTCTGGCGTGATTACTGTTTGAAGGTCAAGGAGTTGCCTCAGTATCAAGCCGTTGCTTCTAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGGAGGAATTAGAGAATAAGTATCATGAAGAAAAAGCTCAGATAAAAGATGTGATGAAGGCAGAGAAGATTACCATCACTTCATCATGGACGTTTGATGACTTTAAGGCTGCCATTGAAGAGGGTGGTTCTCTTGCAGTTTCAGATATAAATTTTAAGCTTGTATACGAGGACTTACTAGAAAGAGCCAAAGAAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTCTGGCTGATGACTTCTCAGGACTTCTCCATACATTCAAGGAGATTACGAATTCTTCCATCTGGGAGGATAGCAAACATCTTTTTGAAGAGAGTGAAGAATATAGATCAATTGGGGAAGAGAGCTTTGCGAAGGAAGTTTTTGAGGAATACATCATTCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGAGAAGGCTAAGAAGGAAAAAGAACGTGAGGAAAAAGAGAAGCGGAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAGGAAAAGGGCCGGGTTAAGAAGGATGAAACAGATAGTGAAAATGTGGATGCAAGCGAAACTCATGTCTACAGAGAAGACAAGAAAAGGGAGAAGGACAAAGATAGGAAACATCGTAAGCGACATCATAGTGCCACTGATGATGGTGGTTCTGATAAAGATGAGAGAGAGGAGTCTAAGAAGTCCCGCAAACACGGTAGTGACCGAAAGAAATCAAGGAAGGCACGTGAATGTCCTCGTAGATGCTTCACGCATATTCACCTGAATCAGACAGTGAGAGTAGGCACAGAAGGCACAAGAGAGATCATCGAGATGGTTCCCGTAGAAATCACGACGAACTAG 2919 43.61 MENLSQSSGGQFRPVIPAQQGQTFISSSAQQFQLAGQNISSSNVGGPAGQIQQHQYPQSIPQLVPRPGHPTYIASSSQPIQMPYVQTRPLTSVPPQSQQNVPAPNNHMHGLGAHGLPLSSPYTFQSMSQMHAPVGVGNSQPWLSSVSQTTNTVSPIEQANQNSSVSATNPQSSSDWQEHSSADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTIPEELKLAREQAQKEAAQGTQTDIAATTPQPTPAVGLSHTETPAISSVNSSISPTVSGVASSPVPVTPFVSVSNSPSVVASGSLTNTGTPIALTTSVPGTVSSQSVAAAGGTGPPAVLHANASSVTPFESLASHDVKNSVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLIFANKLEAKNAFKALLESVNVKSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIKQKKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRNFLESCDYIKVNSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKERVRRIERKNRDEFRKLLDEQITAGILTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLEELENKYHEEKAQIKDVMKAEKITITSSWTFDDFKAAIEEGGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQRLADDFSGLLHTFKEITNSSIWEDSKHLFEESEEYRSIGEESFAKEVFEEYIIHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKEREREKEKGRVKKDETDSENVDASETHVYREDKKREKDKDRKHRKRHHSATDDGGSDKDEREESKKSRKHGSDRKKSRKARECPRRCFTHIHLNQTVRVGTEGTREIIEMVPVEITTN 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1323391 1331450 - CmoCh09G003080.1 Cmo09g00308 388310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00308 972 ProSiteProfiles FF domain profile. 488 543 IPR002713 -
Cmo09g00308 972 MobiDBLite consensus disorder prediction 91 114 - -
Cmo09g00308 972 MobiDBLite consensus disorder prediction 157 181 - -
Cmo09g00308 972 MobiDBLite consensus disorder prediction 901 923 - -
Cmo09g00308 972 ProSiteProfiles FF domain profile. 549 610 IPR002713 -
Cmo09g00308 972 ProSiteProfiles WW/rsp5/WWP domain profile. 170 203 IPR001202 GO:0005515
Cmo09g00308 972 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 9 935 IPR039726 GO:0045292
Cmo09g00308 972 SUPERFAMILY WW domain 204 245 IPR036020 GO:0005515
Cmo09g00308 972 Gene3D - 213 258 - -
Cmo09g00308 972 ProSitePatterns WW/rsp5/WWP domain signature. 176 201 IPR001202 GO:0005515
Cmo09g00308 972 ProSiteProfiles WW/rsp5/WWP domain profile. 211 244 IPR001202 GO:0005515
Cmo09g00308 972 CDD WW 217 244 IPR001202 GO:0005515
Cmo09g00308 972 SUPERFAMILY FF domain 755 824 IPR036517 -
Cmo09g00308 972 Gene3D FF domain 755 830 IPR036517 -
Cmo09g00308 972 ProSiteProfiles FF domain profile. 628 691 IPR002713 -
Cmo09g00308 972 Coils Coil 744 768 - -
Cmo09g00308 972 SUPERFAMILY WW domain 175 209 IPR036020 GO:0005515
Cmo09g00308 972 MobiDBLite consensus disorder prediction 253 279 - -
Cmo09g00308 972 ProSiteProfiles FF domain profile. 421 475 IPR002713 -
Cmo09g00308 972 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 9 935 - -
Cmo09g00308 972 Coils Coil 815 871 - -
Cmo09g00308 972 Pfam FF domain 423 472 IPR002713 -
Cmo09g00308 972 Pfam FF domain 490 540 IPR002713 -
Cmo09g00308 972 Pfam FF domain 558 607 IPR002713 -
Cmo09g00308 972 Pfam FF domain 632 687 IPR002713 -
Cmo09g00308 972 Gene3D FF domain 550 620 IPR036517 -
Cmo09g00308 972 Gene3D FF domain 621 702 IPR036517 -
Cmo09g00308 972 Gene3D FF domain 478 549 IPR036517 -
Cmo09g00308 972 SUPERFAMILY FF domain 415 474 IPR036517 -
Cmo09g00308 972 SUPERFAMILY FF domain 480 550 IPR036517 -
Cmo09g00308 972 CDD WW 174 203 IPR001202 GO:0005515
Cmo09g00308 972 SMART FF_2 556 610 IPR002713 -
Cmo09g00308 972 SMART FF_2 630 691 IPR002713 -
Cmo09g00308 972 SMART FF_2 488 543 IPR002713 -
Cmo09g00308 972 SMART FF_2 421 475 IPR002713 -
Cmo09g00308 972 SMART FF_2 762 817 IPR002713 -
Cmo09g00308 972 Gene3D - 156 212 - -
Cmo09g00308 972 Pfam WW domain 174 201 IPR001202 GO:0005515
Cmo09g00308 972 Pfam WW domain 217 242 IPR001202 GO:0005515
Cmo09g00308 972 MobiDBLite consensus disorder prediction 91 105 - -
Cmo09g00308 972 Coils Coil 682 709 - -
Cmo09g00308 972 Gene3D FF domain 421 476 IPR036517 -
Cmo09g00308 972 SUPERFAMILY FF domain 548 617 IPR036517 -
Cmo09g00308 972 SMART ww_5 212 244 IPR001202 GO:0005515
Cmo09g00308 972 SMART ww_5 171 203 IPR001202 GO:0005515
Cmo09g00308 972 MobiDBLite consensus disorder prediction 254 279 - -
Cmo09g00308 972 MobiDBLite consensus disorder prediction 822 892 - -
Cmo09g00308 972 Coils Coil 604 632 - -
Cmo09g00308 972 MobiDBLite consensus disorder prediction 822 937 - -
Cmo09g00308 972 Coils Coil 537 566 - -
Cmo09g00308 972 MobiDBLite consensus disorder prediction 157 178 - -
Cmo09g00308 972 SUPERFAMILY FF domain 623 698 IPR036517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00308 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1487.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01829 Cmo09g00308 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00308 Cmo-Chr9:1323391 Cmo08g01252 Cmo-Chr8:7901232 8.71E-07 dispersed
Cmo17g00608 Cmo-Chr17:6445084 Cmo09g00308 Cmo-Chr9:1323391 3.28E-35 transposed
Cmo01g01829 Cmo-Chr1:13376230 Cmo09g00308 Cmo-Chr9:1323391 0 wgd
Cmo04g00465 Cmo-Chr4:2310676 Cmo09g00308 Cmo-Chr9:1323391 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00308 Cmo_Chr09 FPKM 0.0 0.0 0.382879 0.545855 1.687614 1.847864 1.680843 0.0 0.0 0.0