Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00310 ATGACTATGGAAGTTACTTCTGAATCTCAGCAGCATTCTGTCTACCACCACCAAAGCCAGCCAACTCCAGCAATAGCTATCTCCAACACCATGTCAAATAGCTTCTCAGCTTCCCAGCACTACAATGGTGATTTTCTGTCTCCCCTGTCTGTAATGCCGCTCAAGTCAGATGGGTCTCTTTGTATCATGGACTCAATCAGCAGATCACAAACTCCAGAAACATTGCCAAACATCTCCCCAAAACTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGAGAGGCGGCCACAGCTCTAAGCTTAGACAGCAGATATTACAATCAAAATCCTGAGGCTAACTCAGAAAGACAACAACGTATTCTTCTTCATTCTGAGCGATACTATTCTGGAATGTTCCATTATCCTGCTGAGGATGTCAACAAGGAGTCTCATATTGCAAGTTATTGCTCTGAAATTCGACAAGATATGGAGCAGCGCATCAATGGCTGCTTTGGAGGAGGGAGGAATTGCCAAGACTTGCAGACACTTAGCTTGTCCATGAGCCCTGGCTCTCAGTCTAGTTGTGTTACTACACCAAGCCAAATTTCTCAATCTGGACAAGCCACCATGGAGACAAAGAAAAGGGCTTTGGCTGATCGAAAGCAGCCGGTCCATCGGAAGTCGATCGACACGTTCGGACAAAGAACTTCACAGTATAGAGGTGTTACAAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGGAGACAAGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTCCGTGGCATAAACGCCGTGACAAACTTCGACACTTCAAGGTACGACGTAGAAAGGATCATGGCGAGCAGTAGCCTCCTCTCAGGAGAATTTGCAAGACGAAATAGAGATCACAAACCAACCAACGCCATCAAACATGAAGAACCAAAGCAGAACATCTCTCGAACCGACCCCGCGGAGATATACAACAACAATTTAGATTGGAGGACTGTATTCCACGAGAACCTGCTGCTGGATCCAAGCGCAAGCGTCGAATCCATAGACCAAAAGTCCATGGCCTCGAGCGGCGGATACCTGAATAATCTGATCGGAGTCGTCGTAGGTTCAAGCAAGTACAAGGCTCAATTCTCCAATGCTTCATCTGTGGTGAGCAGCTTGAGCAGCTCAAGGGAAACTAGTCCTGACAAGCCAAATGGCTCCTCCTCGGTTCCATTTGGAAGCAATGGAAGAAGTATTTGGAAGCAAATGAGGCCAGCTCCTATTTCTTTGCCTGTTGAGTCAACTGTTGCAAATTTTCTTAAAAGAAAGAGACAACTGGTTTGCATAATAAGGTGTATGTATAGAGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGTTGCTTTCTGTAAAGAAAAGGAAAAGAGAAACTTTCTTCAAAAGTGTGATGGAATGAAGCATCAAGCATGGGCGGAGATTAGCTTTGAAAAAGGAATAGATTTGGGTGGTGTTGACCAGAGGTTTGACTGGGGGTGGGTGGGTGGCTGGCGATTGGCTGTGACTAGAAAGAAGATGCAGACAGACGGGAAGAGTATAGCTGGAAATGGAAGAGCAGGACAAGCAATAAGGTTGGTTCGTGAAATGGGTGATCTTGAAAACGACGAAATGGGTTTTCGAAATTCAAACGAGGGGTTACTCAATTGTTCATCTTCCGACAAAATTCCAGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCAATGGTTTCTTCCCATGGCGAATTTTCAAATTCTTTTCCTGTTGTCTTGGAGAGCCATGGTGGGAGTGGGACGACACAGGGTGTTCATTATCCGACAGATTTGGGGTTTGGCAATGGGAATTATTCCGACATGTTTGGTTCTTTTGGTGTTGCCGGGCAGATTCTTGGTGGGTGTTCTTCCAATTACAGAAATGGAGGAACCACAGAGAAGTTATTACCACTATCAGGTGAAGAAACTGCTGCAGGATCACCAAATGGTAAACTCAGAAAACGAGCCCTTGACTCCACTTTCCCATTTAGCCAACCAAACAAGGTGAGGAGGGAGAAGATTAGTGAGCGGATGAGATTGCTTCAAGAGCTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTTATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGATTTTCCACACACGAGGCAGCAACGGAACTGTTCTTGGATATGATCCCGGGTTGAGCGCGGTTTCCCCGGTCCCTCCTCACCGAATATTTCAGCTTCAGGGGACGATGTCAAATATGCCAACCACCACCACATTCACACAGTTTCCTCCTTTGCCTCAGGTAGCTAACATGACCGTGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGAGTTCGGGCACTCACAATTTGGAACCAAATGGTATTCATTCTTGTTCATGA 2538 45.74 MTMEVTSESQQHSVYHHQSQPTPAIAISNTMSNSFSASQHYNGDFLSPLSVMPLKSDGSLCIMDSISRSQTPETLPNISPKLEDFLGGATHGREAATALSLDSRYYNQNPEANSERQQRILLHSERYYSGMFHYPAEDVNKESHIASYCSEIRQDMEQRINGCFGGGRNCQDLQTLSLSMSPGSQSSCVTTPSQISQSGQATMETKKRALADRKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGTQEEAAEAYDIAAIKFRGINAVTNFDTSRYDVERIMASSSLLSGEFARRNRDHKPTNAIKHEEPKQNISRTDPAEIYNNNLDWRTVFHENLLLDPSASVESIDQKSMASSGGYLNNLIGVVVGSSKYKAQFSNASSVVSSLSSSRETSPDKPNGSSSVPFGSNGRSIWKQMRPAPISLPVESTVANFLKRKRQLVCIIRCMYRVCVRERERERERDGVAFCKEKEKRNFLQKCDGMKHQAWAEISFEKGIDLGGVDQRFDWGWVGGWRLAVTRKKMQTDGKSIAGNGRAGQAIRLVREMGDLENDEMGFRNSNEGLLNCSSSDKIPGTMAMGSFFGSGWDPMVSSHGEFSNSFPVVLESHGGSGTTQGVHYPTDLGFGNGNYSDMFGSFGVAGQILGGCSSNYRNGGTTEKLLPLSGEETAAGSPNGKLRKRALDSTFPFSQPNKVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEIFHTRGSNGTVLGYDPGLSAVSPVPPHRIFQLQGTMSNMPTTTTFTQFPPLPQVANMTVLESDIQSLLQMGFDSSSGTHNLEPNGIHSCS 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1336180 1346218 + CmoCh09G003100.1 Cmo09g00310 388312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00310 845 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 710 757 IPR036638 GO:0046983
Cmo09g00310 845 Gene3D AP2/ERF domain 230 293 IPR036955 GO:0003700|GO:0006355
Cmo09g00310 845 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 168 264 - -
Cmo09g00310 845 SUPERFAMILY DNA-binding domain 230 292 IPR016177 GO:0003677
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 168 264 - -
Cmo09g00310 845 SMART rav1_2 231 297 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 266 424 - -
Cmo09g00310 845 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 700 750 IPR011598 GO:0046983
Cmo09g00310 845 SMART finulus 706 756 IPR011598 GO:0046983
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 266 424 - -
Cmo09g00310 845 ProSiteProfiles AP2/ERF domain profile. 231 291 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 131 - -
Cmo09g00310 845 CDD AP2 230 293 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 19 131 - -
Cmo09g00310 845 MobiDBLite consensus disorder prediction 405 427 - -
Cmo09g00310 845 Gene3D - 706 763 IPR036638 GO:0046983
Cmo09g00310 845 Pfam AP2 domain 231 283 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00310 K09285 OVM, ANT; AP2-like factor, ANT lineage - csv:101212143 429.483
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00125 Cmo09g00310 CCT
Cmo09g00310 Cmo12g00550 CCT
Cmo01g01825 Cmo09g00310 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01825 Cmo-Chr1:13364902 Cmo09g00310 Cmo-Chr9:1336180 1.93E-49 dispersed
Cmo09g00310 Cmo-Chr9:1336180 Cmo20g00077 Cmo-Chr20:403519 7.91E-19 dispersed
Cmo01g01823 Cmo-Chr1:13357555 Cmo09g00310 Cmo-Chr9:1336180 2.54E-48 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo09g00310 Cmo-Chr9:1336180 7.39E-65 wgd
Cmo03g00934 Cmo-Chr3:7088777 Cmo09g00310 Cmo-Chr9:1336180 1.60E-29 wgd
Cmo05g00125 Cmo-Chr5:542544 Cmo09g00310 Cmo-Chr9:1336180 7.29E-31 wgd
Cmo07g00637 Cmo-Chr7:2876799 Cmo09g00310 Cmo-Chr9:1336180 1.79E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g608 Blo01g01486 . Bda01g00600 Bda03g00160 . . . . Cmo05g00125 Cmo12g00550 . . Car01g01376 . Sed10g1152 . . Bhi04g00456 Tan02g1691 Cmetu03g0539 . Hepe08g1355 . Lcy13g2154 . . . . . . . . . . . Lsi04g01456 . . . . . . . . . . . . Cmo01g01825 Cmo09g00310 . Cma05g00122 Car05g00104 Car09g00261 Cpe11g00106 . Bhi09g03196 . . . . . . . . . . . . . Lsi08g01547 Csa02g01870 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003749 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 3 2 1 2 1 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10339 PF00847 AP2 4.00E-08 CL0081 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00310 Cmo_Chr09 FPKM 10.826087 9.473679 0.0 3.152056 12.162789 14.606977 10.552107 0.0 2.196705 0.0