Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00312 ATGACGATTATCGTTGCCGCCGACAGAAAGTACCGGCGGAGCCCTAGAAAGTCCCTACTCCCTGAAAAATACGACCATCAGGAGCCTCTGGAAGGGTTAGAGGGCGCATCGTTCTCCGGCGCCGTCTTCAACCTCTCGAGCACCATCGTCGGGGCTGGTATCATGGCTCTCCCGGCCGCCGTGAAGCAATTAGGTCTAATTCCGGGCTTACTCATGATCATCCTCGGATCTACATTGACGGAGTTGTCAATTGACTTTATCCTAAAATTCTCTCGGACATCCAAATCCGCGACGTACGCCGGCGCCGTCGGCGACTCTCTCGGAAGCGCCGGACGGACCCTCTTGCAGGTTTGCATCGTGGTCAATAACTTGGGTATGCTCATCGTCTACATGATCATCATCGGCGATGTGTTTTCGGGAACAACCACAAATAACGTCCACCATAAGGGCGTGATGGAAGAATGGTTCGGTCAACATTGGTGGACCAGCCGCATATCCTTGATGCTGTTTACCACGCTTCTAATTTTTGCGCCTCTAATCTCCTTCAAACGCGTAGATTCCTTGAGATACACATCATCTTTATCAGTGGGCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTATCCATTGCAAAATTGATGGATGGGAGTATTGGAATGCCGCGACTGATGCCTGAACTTATCGATCAGGCATCATTTTGGCAACTTTTTACCACTGTTCCAATTCTAGTCACTGCCTATATCTGTCACCATAATGTTCTCCCGATTGAGAATGAGCTGAAAGATCCGACACAAATGAAGTCAATAGTTCGAACATCTCTAAGAATATGCTCGTCGTTATATATCGCGACGAGCTTCTTCGGATTTATCCTGTTTGGAGACCAAACGTTGGATGATGTCCTTGCCAATTTCGATGGAGATCTTGGACTTCCATACAGCTCGTTGCTTGATGATGTTGTGAGGGTGAGCTATGGCATCCACCTGATGCTTGTTTTTCCAATTGTTTTCTTCTCCCTTCGCCTCAACGTTGATGGTCTGCTGTTTCCCTGTGCCATACCTATTGCTTTCAATAACCGACGATTCTTCTCAATAACCGTAGCTCTCATGAGTTTCATCTTCATTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGAGCCACCGCTGCCATCTCTGTTGGGTTCATATTTCCCGCCGCTCTCGTCCTCAGGGACACTTGTGGGATTGCATCAAATAAGGACAGGGTGATAGCATGGTTAATGTTCCTACTAGCTGTTTTGTCAAGTACGGCTGCAATCTCCAGCGATATCTACAGTACTTACGTGGTCGAGAAACGCGCTTGA 1359 48.34 MTIIVAADRKYRRSPRKSLLPEKYDHQEPLEGLEGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLLMIILGSTLTELSIDFILKFSRTSKSATYAGAVGDSLGSAGRTLLQVCIVVNNLGMLIVYMIIIGDVFSGTTTNNVHHKGVMEEWFGQHWWTSRISLMLFTTLLIFAPLISFKRVDSLRYTSSLSVGLAIVFVAITAGVSIAKLMDGSIGMPRLMPELIDQASFWQLFTTVPILVTAYICHHNVLPIENELKDPTQMKSIVRTSLRICSSLYIATSFFGFILFGDQTLDDVLANFDGDLGLPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPCAIPIAFNNRRFFSITVALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALVLRDTCGIASNKDRVIAWLMFLLAVLSSTAAISSDIYSTYVVEKRA 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1355576 1358754 - CmoCh09G003120.1 Cmo09g00312 388314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00312 452 Pfam Transmembrane amino acid transporter protein 36 421 IPR013057 -
Cmo09g00312 452 PANTHER AMINO ACID TRANSPORTER 12 445 - -
Cmo09g00312 452 PANTHER AMINO ACID TRANSPORTER AVT6A 12 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00312 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01149 Cmo-Chr4:5867115 Cmo09g00312 Cmo-Chr9:1355576 1.45E-126 dispersed
Cmo09g00312 Cmo-Chr9:1355576 Cmo14g01172 Cmo-Chr14:9551964 0 dispersed
Cmo09g00312 Cmo-Chr9:1355576 Cmo04g00114 Cmo-Chr4:598252 2.38E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g02684 CCT,CST,ECH 89 295 Amino Acid/Auxin Permease AAAP Family AT5G02170 50.6 7.3e-64 242.3
Cmo14g01172 . 3 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 68.1 2.7e-172 602.4
Cmo09g00312 . 19 446 Amino Acid/Auxin Permease AAAP Family AT3G30390 58.9 2.2e-145 513.1
Cmo11g01043 . 37 428 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.8 1.3e-138 490.3
Cmo14g01172 . 20 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 67.2 4.1e-165 578.6
Cmo09g00312 . 35 446 Amino Acid/Auxin Permease AAAP Family AT5G38820 57.7 2.1e-137 486.5
Cmo17g00849 . 3 486 Amino Acid/Auxin Permease AAAP Family AT1G80510 72.2 2.8e-183 639.0
Cmo08g00598 . 32 468 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.7 1.3e-172 603.6
Cmo15g00483 CCT,CST,ECH 30 549 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.5 5.9e-134 475.3
Cmo04g01452 CCT,ECH 56 559 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.5 8.3e-128 454.9
Cmo04g01452 CCT,ECH 6 492 Amino Acid/Auxin Permease AAAP Family AT2G39130 66.7 2.7e-178 622.5
Cmo15g00483 CCT,CST,ECH 1 483 Amino Acid/Auxin Permease AAAP Family AT2G39130 66.9 1.3e-175 613.6
Cmo04g02684 CCT,CST,ECH 1 296 Amino Acid/Auxin Permease AAAP Family AT2G39130 54.3 5.2e-97 352.4
Cmo11g01043 . 94 427 Amino Acid/Auxin Permease AAAP Family AT5G15240 60.7 2.2e-110 396.4
Cmo04g01148 . 22 433 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.6 7.5e-132 468.0
Cmo04g00114 CST 20 426 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.5 1.1e-130 464.2
Cmo04g01149 CST 10 396 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.5 4.1e-122 435.6
Cmo15g00483 CCT,CST,ECH 1 497 Amino Acid/Auxin Permease AAAP Family AT3G54830 62.1 1.7e-165 580.1
Cmo04g01452 CCT,ECH 1 506 Amino Acid/Auxin Permease AAAP Family AT3G54830 61.9 4.2e-164 575.5
Cmo04g02684 CCT,CST,ECH 1 296 Amino Acid/Auxin Permease AAAP Family AT3G54830 52.6 2.8e-91 333.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00312 Cmo_Chr09 FPKM 3.136412 4.14887 1.422698 1.849058 3.732542 3.467305 3.287452 1.8368 1.560038 2.200658