Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo09g00319 | ATGGATGCCGATTGTAACACGGGGCTTCTTCTAGGGCTGGGGCGGGGTTTGGATCATCATAATTCCATGCGCCCGCACGTACCGGATGTGGCTGGTGTTAAGAAGAAGCTTCAGGTTTTGAAATTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGGTTGTTGTCGACAAGAGCGGCGGAGAATCCGCCGCCACCGCCGCGGACGAGTTGATTCAGCAAGGCTCTTCGGGTAGTCCGGTGTCGTCGTTTTCTCACTCATCGGGGTTTAAAAGGGAGCGAGACGGCGGCGCCGGTGAAGAGCCGGCTGAAGCGGAGGTGTTTATGGAGAGAATCTCTATGAAAGTTGCTGAAGAAGAGGAAGATGGAAGCCCAAGGAAGAAACTTAGACTCACTAAAGAACAATCCGCCGTTTTAGAAGACAATTTCAAAGAACACTCCAGCCTCAGTCCTAAGCAAAAACAGGATTTGGCAAGACAGTTAAACCTAAGACCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACGGAAATGGACTGTGAATTACTGAAGAAATGCTGTGAAAAGCTCAAAGAAGAGAACACCAAGCTTCAAAAGGAACTTCAAGAGCTTAAATCCCTCAAATTAACTGCCCCGCCGTTCTGCATGCAGCTACAAGCCGCCACCCTCACCGTTTGCCCTTCCTGTGAGAGCTCCATTTGCGGCGGCGGCGGCGGCGGTGGCGGAGGAGGAGGCGCCGATGCTTCTCCAGCTAACACCTTCTCAATTGGGTCAAAGCCTCACTTTCTCAAATTCCCATTTAACCACCCATCGGCGGCTTGTTAA | 852 | 50.35 | MDADCNTGLLLGLGRGLDHHNSMRPHVPDVAGVKKKLQVLKFDDILPSLTLGLSVVVDKSGGESAATAADELIQQGSSGSPVSSFSHSSGFKRERDGGAGEEPAEAEVFMERISMKVAEEEEDGSPRKKLRLTKEQSAVLEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTKLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCESSICGGGGGGGGGGGADASPANTFSIGSKPHFLKFPFNHPSAAC | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1389769 | 1391198 | + | CmoCh09G003190.1 | Cmo09g00319 | 388321 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo09g00319 | 283 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
| Cmo09g00319 | 283 | Pfam | Homeodomain | 127 | 181 | IPR001356 | GO:0003677 | |
| Cmo09g00319 | 283 | ProSiteProfiles | 'Homeobox' domain profile. | 123 | 183 | IPR001356 | GO:0003677 | |
| Cmo09g00319 | 283 | SUPERFAMILY | Homeodomain-like | 124 | 191 | IPR009057 | - | |
| Cmo09g00319 | 283 | PANTHER | - | 6 | 283 | - | - | |
| Cmo09g00319 | 283 | SMART | HOX_1 | 125 | 187 | IPR001356 | GO:0003677 | |
| Cmo09g00319 | 283 | Gene3D | - | 133 | 179 | - | - | |
| Cmo09g00319 | 283 | Coils | Coil | 182 | 219 | - | - | |
| Cmo09g00319 | 283 | CDD | homeodomain | 126 | 184 | IPR001356 | GO:0003677 | |
| Cmo09g00319 | 283 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 | 6 | 283 | - | - | |
| Cmo09g00319 | 283 | MobiDBLite | consensus disorder prediction | 73 | 88 | - | - | |
| Cmo09g00319 | 283 | Pfam | Homeobox associated leucine zipper | 183 | 216 | IPR003106 | GO:0006355|GO:0043565 | |
| Cmo09g00319 | 283 | SMART | halz | 183 | 226 | IPR003106 | GO:0006355|GO:0043565 | |
| Cmo09g00319 | 283 | MobiDBLite | consensus disorder prediction | 73 | 103 | - | - | |
| Cmo09g00319 | 283 | ProSitePatterns | 'Homeobox' domain signature. | 158 | 181 | IPR017970 | GO:0000981|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo09g00319 | Cmo-Chr9:1389769 | Cmo17g00902 | Cmo-Chr17:8159676 | 1.24E-61 | dispersed | |
| Cmo03g00920 | Cmo-Chr3:7019514 | Cmo09g00319 | Cmo-Chr9:1389769 | 7.06E-66 | wgd | |
| Cmo07g00624 | Cmo-Chr7:2812539 | Cmo09g00319 | Cmo-Chr9:1389769 | 1.96E-68 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10341 | PF00046 | Homeodomain | 2.20E-17 | CL0123 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo09g00319 | K09338 | - | csv:101212868 | 340.502 |