Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00320 ATGGAGGAATATAATAATCATGTAAACGAAAACTCAAATCCGAGAGGGAATTTCTTGTACCCATCGGGAGTGGTTGGGGGGAATTCTTCATCAGGTAATTTCGGAAGGTCATCTAATCCGACGGCTCAGATGGGTCTCAATTCCTTTCATCTTCAACAAGGAACCGACTGTTTTCAAACCGACCATTCCCACCCGATTGTCAAGACGGAAGCCAGTTCTTCACACCATCAGCTCCACAAATTTCACCACCCTTTACTCAGAGGCGGAGGAGGAGGGCAGCCGCCGCCGCCGCCGACGACATGTCGGCCTGACCAACACGGCTTACTCGATGTGGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTGGAAGCCTACATGGAATGTCAAAAGGTGGGTGCTCCGCCGCAAGTGGTGGAACGCCTGGTGGCGGCTCGGCATGAATTCGAAACACGGCAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTCGACCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGTGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGACGGGTCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCTCTTCGGATCTTCAATTCCGACGAGAAGTGTGAGGGTATGGGATCGTCGGAGGAGGAACAAGAAAATAGCGGCGGAGAAACCGAGCTACCGGAGATCGACCCACGTGCCGAAGACAGAGAATTGAAGAACCACCTATTGAGAAAGTACAGTGGCTACTTAAGCAGTCTCAAGCAAGAACTTTCAAAGAAGAAGAAAAAGGGAAAGCTCCCAAAAGATGCAAGGCAGAAGCTTCTTAATTGGTGGGAGTTGCACTACAAATGGCCATACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAGTCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCCTCTGAAGATATGCAGTTCATGGTCATGGATGGGCTTCACCCTCCCAACACCGCCCTCTATATCGACGGTCACTACATGACCGATGCCCATTATCGACTCGGACCGTGA 1125 49.69 MEEYNNHVNENSNPRGNFLYPSGVVGGNSSSGNFGRSSNPTAQMGLNSFHLQQGTDCFQTDHSHPIVKTEASSSHHQLHKFHHPLLRGGGGGQPPPPPTTCRPDQHGLLDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARHEFETRQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVESQLSSLCNGPLRIFNSDEKCEGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNTALYIDGHYMTDAHYRLGP 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1391789 1393934 - CmoCh09G003200.1 Cmo09g00320 388322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00320 374 Pfam KNOX1 domain 113 155 IPR005540 GO:0003677|GO:0005634
Cmo09g00320 374 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
Cmo09g00320 374 MobiDBLite consensus disorder prediction 1 20 - -
Cmo09g00320 374 Pfam ELK domain 256 277 IPR005539 GO:0003677
Cmo09g00320 374 SMART HOX_1 278 343 IPR001356 GO:0003677
Cmo09g00320 374 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Cmo09g00320 374 SMART KNOX1_2 112 156 IPR005540 GO:0003677|GO:0005634
Cmo09g00320 374 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 366 - -
Cmo09g00320 374 SMART ELK_2 256 277 IPR005539 GO:0003677
Cmo09g00320 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 366 - -
Cmo09g00320 374 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Cmo09g00320 374 CDD homeodomain 288 340 IPR001356 GO:0003677
Cmo09g00320 374 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
Cmo09g00320 374 MobiDBLite consensus disorder prediction 223 251 - -
Cmo09g00320 374 Pfam KNOX2 domain 168 213 IPR005541 GO:0003677|GO:0005634
Cmo09g00320 374 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981|GO:0006355
Cmo09g00320 374 SUPERFAMILY Homeodomain-like 277 353 IPR009057 -
Cmo09g00320 374 Gene3D - 281 343 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00320 Cmo12g00559 CCT
Cmo01g01817 Cmo09g00320 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00580 Cmo-Chr3:5622973 Cmo09g00320 Cmo-Chr9:1391789 8.53E-84 dispersed
Cmo07g00320 Cmo-Chr7:1518538 Cmo09g00320 Cmo-Chr9:1391789 1.91E-88 dispersed
Cmo09g00320 Cmo-Chr9:1391789 Cmo11g01880 Cmo-Chr11:13095540 2.01E-81 dispersed
Cmo15g01252 Cmo-Chr15:8604183 Cmo09g00320 Cmo-Chr9:1391789 1.43E-29 dispersed
Cmo01g01817 Cmo-Chr1:13322815 Cmo09g00320 Cmo-Chr9:1391789 0 wgd
Cmo12g00559 Cmo-Chr12:3457585 Cmo09g00320 Cmo-Chr9:1391789 6.40E-122 wgd
Cmo05g00119 Cmo-Chr5:501389 Cmo09g00320 Cmo-Chr9:1391789 3.14E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10342 PF03791 KNOX2 4.20E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00320 - - csv:101213104 608.216