Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00324 ATGATCGGCGAACAATCTAGATTCACTCATACCATTCAAGTTCCCCCCTGGGACCCACACGAAGACCACCATACCATTGGAATTTCCTCGCCGGTCTTCATTCCCGGTGGGCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTACCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCACGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCAAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTCTGTCGCCGAATTGCCCCCAACTCGGCGGTGGGTCATTCAATTCAATGACTAAACTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAAAACCTCATTGGGGGATTCAATTAGGACAAAATCTGCTCTCTCCCTCCGGCTCTGGTTTCTACAGTCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTACGCAAAACTCAGCAAAGACAACTCCGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTAA 1050 52.95 MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGGGSFNSMTKLASSHLKIGKSKAKPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1409001 1410050 + CmoCh09G003240.1 Cmo09g00324 388326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00324 349 Gene3D - 107 181 - -
Cmo09g00324 349 PANTHER UNKEMPT FAMILY MEMBER 8 348 IPR045234 -
Cmo09g00324 349 ProSiteProfiles Zinc finger C3H1-type profile. 113 139 IPR000571 GO:0046872
Cmo09g00324 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 348 - -
Cmo09g00324 349 SMART c3hfinal6 112 138 IPR000571 GO:0046872
Cmo09g00324 349 SMART c3hfinal6 147 170 IPR000571 GO:0046872
Cmo09g00324 349 MobiDBLite consensus disorder prediction 1 21 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00118 Cmo09g00324 CCT
Cmo05g00118 Cmo09g00324 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00324 Cmo-Chr9:1409001 Cmo11g00683 Cmo-Chr11:3277711 1.37E-105 dispersed
Cmo01g01815 Cmo-Chr1:13306877 Cmo09g00324 Cmo-Chr9:1409001 1.14E-170 wgd
Cmo10g00717 Cmo-Chr10:3287572 Cmo09g00324 Cmo-Chr9:1409001 7.38E-104 wgd
Cmo12g00560 Cmo-Chr12:3468989 Cmo09g00324 Cmo-Chr9:1409001 1.30E-91 wgd
Cmo05g00118 Cmo-Chr5:495566 Cmo09g00324 Cmo-Chr9:1409001 7.00E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10343 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00324 - - cpep:111797621 697.967