Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00336 ATGTCGAGAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGATTTAATGAGCACCAGCGATTGAACGATGCTCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCATCTTCTTCTGGGTCATCCTCGTCTCTGTCTATGGCGGCTTCCACTACAATGGGGAGAATGGAGGCCGTTGAATCAGTCGTTGATCAGGTGACTTCTGGGGATGTGGGCGATACGTGCGTGGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTACAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTCGAGACAGGACACTGAATCCGCTCAGATCGATGCCGCCAAGCGGATGAGTCTTGGCTGTTCGCCTTCAATCTCCGGCAGTCAAGCTCTTGCCGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGACGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTACAAATTCTAGCACCCGAGGAAAGATGCCACTGTTAGTCGATCTTAAAGAAATATGTGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATTCCGAGCTCCAACGTTTGGAAAGACAAGCATATAACATATTCATGGAATGTAGAGTTTCTGAGTATGGCTTCATTTTAAGTGGACTGGTTCAAAAGATTGCTGATCTAGTTGTGGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCGCAGGAGTTATGAAATGCGTAGTTCTCTGAGCACTATTATTCTACCACTCGGACGTCTTGATATTGGACTTGCACGTCATCGAGCTTTGCTTTTCAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACCGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGCCAATTTTCGAATTATAGCTTTGATAGGAGGCCTGCAGATGTTATCGAAATTCCTGAAGATACGACAGTGTTACAAAATGAAGGATCTGAAGCGGTGTCGATGGCATCTACTCAAGATGAAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAATATTAGGAGCTTCATTGAAGAAATTCAAGCTGGGAATTCTGACTATGATTTTGGGAAGCTTCTAGAATTAGAAAGCTGCGCGTGTGAAAATTCATCAGGTGCATGTGATCAGTCCGCATCTGCACAAAAGAAGAAAGTGAAAAAAGTGTCGAAGTATGTCATAAATGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTGCATGCTGTCTTGTTAGAAAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCCCAGGGTAATGGTGAAAGCAAAGAAACTTTCCAAATGTATCCAATCGATGGAAGAGGCGTAGACGTTGGGCTTCAGTGCCACCCTTATATTTTAGCAAGCCACGGACAGTCTTCTGCTACTTCTACTGAATCAGTGTTTTTGAACAATGTTGTCCATGGAAATAAGCAGAAAGTGTCTGCTGAGGGATCATCTGAAGAACAAACACCCGAGGCAAATGCAAACAAGCACACCATATTTTGGCCCCACAATATGGAAAACAACAGATTTGTGTTCGTCGATGTTAATGGAGAAACAGGCAAATTGGCTGATGTTAATGGAACTTTTCATCGTGAGCACGTGGATGGTGTTTCGTTGGCATCTGATGCTGACTCTGATAACAGACAATTAGGAAGTGTCTTCGTGAGTGAAGAAAGAAGATTTTTGAAAGATAAGAGTGGTGGAACTCTTCAGTGCTTCGATTTGCGTGAAAATCTGCATGACAATTTGTTAGAAATTGATAATGGTAACCAGCGTGCTAGTGATGTCCGCAGTGAGACAATTGACCCAATATTAGGTGAGGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGAATTGGTATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTGTCTGGTGCTGCTTTAGTTCAATTAAAGTGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTCGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCACATTTCTCTATCCTTACAGAGTTTCTACCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAACTCTCAACTCGATGAAGGGAGACGATTGAAAATGGCTCTTGATGTGGTAAGGAAAGTCCTTCCCCCACAAAATATGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTCCATAGAGATCTAAAATCTCCCAATCTGCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTCGGTTTGTCACGTGTCAAGCAGAACACATTTCTGTCTTCAAAGTCGACTGCTGGAACGGTAATAACCTTGATAATAGTTAGCTTGATAATTAGCACATCCGGGACTTCCATAGCAATCGATAATGCTAATTGTTTCTACTTAATTCCTGAATGGATGGCGCCAGAAGTTCTAAGGAACGAACCAGCCAACGAGAAGTGCGATGTGTATAGTTTTGGTGTGATACTGTGGGAGTTGACGACATGCTGCATACCATGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGACTGGAGATTCCAGAAAATGTTGATCCTGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGAACTCGCATCTGAGGCCGTCGTTCTCTCAGCTTATTACTCGACTGCGACGCCTTCAACGGCTTGTTCAGGAAACAAACTCCGAGAATCAAATGTCGGAGTGA 3030 43.43 MSRMKHLLRKLHIGGGFNEHQRLNDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMAASTTMGRMEAVESVVDQVTSGDVGDTCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSISGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITTNSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDSELQRLERQAYNIFMECRVSEYGFILSGLVQKIADLVVARMGGPVGDAEEMLRRWTRRSYEMRSSLSTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYSFDRRPADVIEIPEDTTVLQNEGSEAVSMASTQDEVANICNLISKEASDLDAQSKENIRSFIEEIQAGNSDYDFGKLLELESCACENSSGACDQSASAQKKKVKKVSKYVINAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGESKETFQMYPIDGRGVDVGLQCHPYILASHGQSSATSTESVFLNNVVHGNKQKVSAEGSSEEQTPEANANKHTIFWPHNMENNRFVFVDVNGETGKLADVNGTFHREHVDGVSLASDADSDNRQLGSVFVSEERRFLKDKSGGTLQCFDLRENLHDNLLEIDNGNQRASDVRSETIDPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDEGRRLKMALDVVRKVLPPQNMAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTVITLIIVSLIISTSGTSIAIDNANCFYLIPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCCIPWKGLNPMQVVGAVGFQNRRLEIPENVDPAVAQIICDCWQTNSHLRPSFSQLITRLRRLQRLVQETNSENQMSE 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1444748 1452831 - CmoCh09G003360.1 Cmo09g00336 388338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00336 1009 PANTHER SERINE-THREONINE PROTEIN KINASE 901 1006 - -
Cmo09g00336 1009 PANTHER SERINE-THREONINE PROTEIN KINASE 82 871 - -
Cmo09g00336 1009 MobiDBLite consensus disorder prediction 44 64 - -
Cmo09g00336 1009 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Cmo09g00336 1009 SUPERFAMILY Protein kinase-like (PK-like) 682 989 IPR011009 -
Cmo09g00336 1009 SMART serkin_6 700 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00336 1009 Gene3D Transferase(Phosphotransferase) domain 1 778 1009 - -
Cmo09g00336 1009 Coils Coil 984 1009 - -
Cmo09g00336 1009 CDD STKc_MAP3K-like 706 991 - -
Cmo09g00336 1009 MobiDBLite consensus disorder prediction 13 66 - -
Cmo09g00336 1009 Pfam Ethylene-responsive protein kinase Le-CTR1 143 347 - -
Cmo09g00336 1009 ProSiteProfiles Protein kinase domain profile. 700 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00336 1009 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 901 1006 - -
Cmo09g00336 1009 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 82 871 - -
Cmo09g00336 1009 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Cmo09g00336 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Cmo09g00336 1009 Pfam Protein kinase domain 701 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00336 Cmo-Chr9:1444748 Cmo11g01013 Cmo-Chr11:5497639 4.47E-72 dispersed
Cmo01g01773 Cmo-Chr1:13120602 Cmo09g00336 Cmo-Chr9:1444748 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74556 PF00069 Pkinase 6.20E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00336 K04424 - csv:101214554 1612.05