Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00342 ATGGATGGTTTTTTCCGAACAGTGGTGGCGAGTGTGCCTGTGGGAGTGGGTGCACTATTGTTCACGACGTTGTGCGTCGTGGGAGGGGGGTTGGTTTATTTCTATGGACCTTACTGGGGAGTGAGAAGGGTGCCTGGTCCACCAGCTATTCCGCTGGTCGGACACCTTCCCTTGCTGGCTAAGTACGGCCCAGACGTTTTCTCTGTCCTCGCCTCCCAATATGGCCCCATCTTCAGGTTCCATATGGGTAGGCAGCCATTGATAATTATAGCAGACCCTGAGCTTTGTAAAGAAGTTGGTATCAAGAAATTCAAGGACATCCCAAATAGAAGTGTCCCTTCTCCAATATCAGCTTCCCCGCTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCGACAATGCGAAACACTATACTATCGGTCTATCAGCCCTCTCATCTTACGAGACTAATACCTACTATGCAATCAATCATTGAAACTGCCACTCAAAATCTCCATTCCTCTGTCGAGGAAGACATCCCTTTCTCCAATCTCTCCCTCAAATTGACCACCGATGTAATTGGAACAGCAGCCTTCGGTGTCAACTTTGGGCTCTCTAATCCTCAAGCAACCAAAACTTGCGGTACCAATGGCCGTGACAGCAAAAATGATGAAGTTTCAGACTTCATCAATCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCGGGTTCCTTCTCAATCATTTTGGGACTTCTTGTCCCTATACTCCAAGAACCATTTAGACAAATCCTGAAGAGAATACCATCCACCATGGACTGGAAAGTTGACCGGACAAATCAGAAGTTAAGTGGTCGGCTTAATGAGATCGTGGACAAGAGAATGAAATGTAACGATCGAAGTTCAAAAGACTTCTTATCTCTCATTTTGAGAGCAAGAGAGTCAGAGACGGTATCAAGGAATGTCTTCTCTCCAGACTACATCAGCGCAGTCACGTACGAACACCTACTTGCTGGTTCAGCTACTACAGCATTCACGTTGTCTTCTATTGTATATTTAGTTGCTGGACATCCAGAAGTCGAGAAGAAGTTGCTAGAAGAGATTGACAACTATGGTCCATCAGATCAGATACCAACAGCTAATGATCTTCAACAAAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGGTTCTACACTGTTTCCCCTCTAGTAGCTAGGGAGACATCTAAAGATGTGGAGATTGGTGGATATCTTCTTCCCAAGGGAACATGGGTTTGGTTAGCACTTGGAGTTCTTGCCAAGGATCCAAAGAATTTTCCAGAACCTGATAAATTTAAACCCGAGAGGTTTGATCCAGATGCAGAAGAGGAGAAACAAAGACACCCCTATGCCTTAATCCCGTTCGGAATTGGTCCTCGAGCATGTATTGGTCAGAAGTTCGCCCTTCAGGAATTGAAGCTCACTTTGATTCATTTGTATAGGAAGTTTGCATTTAGGCATTCCCTCTCCATGGAACAACCTCTTGAACTTGAGTATGGTGTCATTCTCAACTTCAAGAATGGTGTCAAGCTCAGAGTGATTAACCGTAAATAG 1596 44.55 MDGFFRTVVASVPVGVGALLFTTLCVVGGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQPSHLTRLIPTMQSIIETATQNLHSSVEEDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCGTNGRDSKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQILKRIPSTMDWKVDRTNQKLSGRLNEIVDKRMKCNDRSSKDFLSLILRARESETVSRNVFSPDYISAVTYEHLLAGSATTAFTLSSIVYLVAGHPEVEKKLLEEIDNYGPSDQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDKFKPERFDPDAEEEKQRHPYALIPFGIGPRACIGQKFALQELKLTLIHLYRKFAFRHSLSMEQPLELEYGVILNFKNGVKLRVINRK 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1476828 1480546 + CmoCh09G003420.1 Cmo09g00342 388344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00342 531 PRINTS E-class P450 group I signature 325 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS E-class P450 group I signature 389 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS E-class P450 group I signature 345 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 Gene3D Cytochrome P450 35 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Cmo09g00342 531 PRINTS P450 superfamily signature 390 401 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PRINTS P450 superfamily signature 336 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PANTHER THROMBOXANE-A SYNTHASE 14 530 - -
Cmo09g00342 531 Pfam Cytochrome P450 45 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 SUPERFAMILY Cytochrome P450 37 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00342 531 PANTHER CYTOCHROME P450 FAMILY PROTEIN 14 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00342 Cmo-Chr9:1476828 Cmo11g01103 Cmo-Chr11:6161742 3.95E-36 dispersed
Cmo09g00342 Cmo-Chr9:1476828 Cmo12g01254 Cmo-Chr12:11107044 8.73E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00342 K20771 - csv:101209772 1008.82