Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00343 ATGGGGGGTTCTGGGAAATGGAGGAAGGTCTTTACAGGGCAGAGGAAGTCTGAGAAGGACGACAATGAGAAGTTGTGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGTATGGAAGGGTTATAAAGGGGCACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGCCTGATTCTTTTACTGCCGCCGTCGCCGCTGTCCTCCGTGCTCCGCCCAAGAATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGAGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTATTACACTGAGGTGCATGCAGGCTCTGGTTAGAGTCCAAGCTCGTGTCCGAGCGCGTCATGTGAGGATGTCGGTTGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCCTAAAGCAAGCTGAGGTTGTCATAATACAAGGAGAAGATGAAGGTTGGTGTGATAGCAAAGGGACAATGGAAGATATCAAAGCTAAGTTACAAATGAAGCAATATGGAGCATTTAAGAGGGAAAGAGCAATTGCTTACTCTCTTGTTCAGAAGCAATTGAAGGCAACACCAAGCTCAACTTCGCAAGAGAAGTTGTGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGTATGGAAGGGTTATAAAGGGGCACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGCCTGATTCTTTTACTGCCGCCGTCGCCGCTGTCCTCCGTGCTCCGCCCAAGAATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGAGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTATTACACTGAGGTGCATGCAGGCTCTGGTTAGAGTCCAAGCTCGTGTCCGAGCGCGTCATGTGAGGATGTCGGTTGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCCTAAAGCAAGCTGAGGTTGTCATAATACAAGGAGAAGATGAAGGTTGGTGTGATAGCAAAGGGACAATGGAAGATATCAAAGCTAAGTTACAAATGAAGCAATATGGAGCATTTAAGAGGGAAAGAGCAATTGCTTACTCTCTTGTTCAGAAGCAATTGAAGGCAACACCAAGCTCAACTTCGCAAGTAAATGCATCGATTTACGCTCTTAAGAATTCCGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCTAAGCCATGGGAGACAATGTTGAAAGAACAATCTCGCACTGATTCCATTGAGGTCACTCCACCACCTTCAAAGAAATGTATAGAGTCTATCGTACCTAAACATTCCATAGTTTCTGAACCAAGTTTGGTGAAGATTCGGAGAAACAATGTATCCACTAGGATATCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCCGGTACGATGAGAGCTCTGTTTCATCTTCGATCTGCACATCGACAACTCCTGCGTCGGGGAATGTTTTCTCAACCATTGAAAGACCTGAGAATAGCAGTTATAGTAGGCCAAGTTACATGAACCCTACAGAGTCGACAAAGGTGAAGCAGAAAACAAACAGTCATTTATCGCATCGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGATAGGAAAGTCAGAAGAAGACAGGAAACTGACCTGAAGATGGGGCCATATTGGGAGGCGAGGACAGAGAAAACGTCTGGGCCGTACTTAGCCAGCAAGGGAAGGTGTCCGACCAGCGGAATAGCTGGTGGACCAGGCACCCTTCTCACTCCCCAGTAA 2049 48.22 MGGSGKWRKVFTGQRKSEKDDNEKLCSKTKKWRLWRSPSGDLSSVWKGYKGAHKAASEGSDSPRAPDSFTAAVAAVLRAPPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAITLRCMQALVRVQARVRARHVRMSVEGQAVQQLLNEHRSKADLLKQAEVVIIQGEDEGWCDSKGTMEDIKAKLQMKQYGAFKRERAIAYSLVQKQLKATPSSTSQEKLCSKTKKWRLWRSPSGDLSSVWKGYKGAHKAASEGSDSPRAPDSFTAAVAAVLRAPPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAITLRCMQALVRVQARVRARHVRMSVEGQAVQQLLNEHRSKADLLKQAEVVIIQGEDEGWCDSKGTMEDIKAKLQMKQYGAFKRERAIAYSLVQKQLKATPSSTSQVNASIYALKNSEFDKNNWGWSWLERWMAAKPWETMLKEQSRTDSIEVTPPPSKKCIESIVPKHSIVSEPSLVKIRRNNVSTRISAKPPSSGQARSCSSPSSDFRYDESSVSSSICTSTTPASGNVFSTIERPENSSYSRPSYMNPTESTKVKQKTNSHLSHRVQRQSMDEYQFLQKSADRKVRRRQETDLKMGPYWEARTEKTSGPYLASKGRCPTSGIAGGPGTLLTPQ 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1477225 1483794 - CmoCh09G003430.1 Cmo09g00343 388345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00343 682 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 235 - -
Cmo09g00343 682 Gene3D - 88 136 - -
Cmo09g00343 682 MobiDBLite consensus disorder prediction 1 23 - -
Cmo09g00343 682 MobiDBLite consensus disorder prediction 656 682 - -
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 328 355 IPR000048 GO:0005515
Cmo09g00343 682 PANTHER IQ-DOMAIN 5-RELATED 1 235 - -
Cmo09g00343 682 MobiDBLite consensus disorder prediction 532 605 - -
Cmo09g00343 682 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 239 630 - -
Cmo09g00343 682 SMART iq_5 111 132 IPR000048 GO:0005515
Cmo09g00343 682 SMART iq_5 88 110 IPR000048 GO:0005515
Cmo09g00343 682 SMART iq_5 303 325 IPR000048 GO:0005515
Cmo09g00343 682 SMART iq_5 326 347 IPR000048 GO:0005515
Cmo09g00343 682 MobiDBLite consensus disorder prediction 532 615 - -
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 304 332 IPR000048 GO:0005515
Cmo09g00343 682 PANTHER IQ-DOMAIN 5-RELATED 239 630 - -
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 306 325 IPR000048 GO:0005515
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 328 345 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00343 Cmo-Chr9:1477225 Cmo10g00895 Cmo-Chr10:4380090 5.66E-43 dispersed
Cmo18g00095 Cmo-Chr18:647768 Cmo09g00343 Cmo-Chr9:1477225 1.10E-19 dispersed
Cmo17g00690 Cmo-Chr17:7036672 Cmo09g00343 Cmo-Chr9:1477225 4.92E-56 transposed
Cmo01g01783 Cmo-Chr1:13169419 Cmo09g00343 Cmo-Chr9:1477225 1.77E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00343 - - csv:101210019 657.521