Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00343 ATGGGGGGTTCTGGGAAATGGAGGAAGGTCTTTACAGGGCAGAGGAAGTCTGAGAAGGACGACAATGAGAAGTTGTGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGTATGGAAGGGTTATAAAGGGGCACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGCCTGATTCTTTTACTGCCGCCGTCGCCGCTGTCCTCCGTGCTCCGCCCAAGAATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGAGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTATTACACTGAGGTGCATGCAGGCTCTGGTTAGAGTCCAAGCTCGTGTCCGAGCGCGTCATGTGAGGATGTCGGTTGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCCTAAAGCAAGCTGAGGTTGTCATAATACAAGGAGAAGATGAAGGTTGGTGTGATAGCAAAGGGACAATGGAAGATATCAAAGCTAAGTTACAAATGAAGCAATATGGAGCATTTAAGAGGGAAAGAGCAATTGCTTACTCTCTTGTTCAGAAGCAATTGAAGGCAACACCAAGCTCAACTTCGCAAGAGAAGTTGTGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGTATGGAAGGGTTATAAAGGGGCACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGCCTGATTCTTTTACTGCCGCCGTCGCCGCTGTCCTCCGTGCTCCGCCCAAGAATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGAGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTATTACACTGAGGTGCATGCAGGCTCTGGTTAGAGTCCAAGCTCGTGTCCGAGCGCGTCATGTGAGGATGTCGGTTGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCCTAAAGCAAGCTGAGGTTGTCATAATACAAGGAGAAGATGAAGGTTGGTGTGATAGCAAAGGGACAATGGAAGATATCAAAGCTAAGTTACAAATGAAGCAATATGGAGCATTTAAGAGGGAAAGAGCAATTGCTTACTCTCTTGTTCAGAAGCAATTGAAGGCAACACCAAGCTCAACTTCGCAAGTAAATGCATCGATTTACGCTCTTAAGAATTCCGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCTAAGCCATGGGAGACAATGTTGAAAGAACAATCTCGCACTGATTCCATTGAGGTCACTCCACCACCTTCAAAGAAATGTATAGAGTCTATCGTACCTAAACATTCCATAGTTTCTGAACCAAGTTTGGTGAAGATTCGGAGAAACAATGTATCCACTAGGATATCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCCGGTACGATGAGAGCTCTGTTTCATCTTCGATCTGCACATCGACAACTCCTGCGTCGGGGAATGTTTTCTCAACCATTGAAAGACCTGAGAATAGCAGTTATAGTAGGCCAAGTTACATGAACCCTACAGAGTCGACAAAGGTGAAGCAGAAAACAAACAGTCATTTATCGCATCGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGATAGGAAAGTCAGAAGAAGACAGGAAACTGACCTGAAGATGGGGCCATATTGGGAGGCGAGGACAGAGAAAACGTCTGGGCCGTACTTAGCCAGCAAGGGAAGGTGTCCGACCAGCGGAATAGCTGGTGGACCAGGCACCCTTCTCACTCCCCAGTAA 2049 48.22 MGGSGKWRKVFTGQRKSEKDDNEKLCSKTKKWRLWRSPSGDLSSVWKGYKGAHKAASEGSDSPRAPDSFTAAVAAVLRAPPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAITLRCMQALVRVQARVRARHVRMSVEGQAVQQLLNEHRSKADLLKQAEVVIIQGEDEGWCDSKGTMEDIKAKLQMKQYGAFKRERAIAYSLVQKQLKATPSSTSQEKLCSKTKKWRLWRSPSGDLSSVWKGYKGAHKAASEGSDSPRAPDSFTAAVAAVLRAPPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAITLRCMQALVRVQARVRARHVRMSVEGQAVQQLLNEHRSKADLLKQAEVVIIQGEDEGWCDSKGTMEDIKAKLQMKQYGAFKRERAIAYSLVQKQLKATPSSTSQVNASIYALKNSEFDKNNWGWSWLERWMAAKPWETMLKEQSRTDSIEVTPPPSKKCIESIVPKHSIVSEPSLVKIRRNNVSTRISAKPPSSGQARSCSSPSSDFRYDESSVSSSICTSTTPASGNVFSTIERPENSSYSRPSYMNPTESTKVKQKTNSHLSHRVQRQSMDEYQFLQKSADRKVRRRQETDLKMGPYWEARTEKTSGPYLASKGRCPTSGIAGGPGTLLTPQ 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1477225 1483794 - CmoCh09G003430.1 Cmo09g00343 388345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00343 682 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 235 - -
Cmo09g00343 682 Gene3D - 88 136 - -
Cmo09g00343 682 MobiDBLite consensus disorder prediction 1 23 - -
Cmo09g00343 682 MobiDBLite consensus disorder prediction 656 682 - -
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 328 355 IPR000048 GO:0005515
Cmo09g00343 682 PANTHER IQ-DOMAIN 5-RELATED 1 235 - -
Cmo09g00343 682 MobiDBLite consensus disorder prediction 532 605 - -
Cmo09g00343 682 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 239 630 - -
Cmo09g00343 682 SMART iq_5 111 132 IPR000048 GO:0005515
Cmo09g00343 682 SMART iq_5 88 110 IPR000048 GO:0005515
Cmo09g00343 682 SMART iq_5 303 325 IPR000048 GO:0005515
Cmo09g00343 682 SMART iq_5 326 347 IPR000048 GO:0005515
Cmo09g00343 682 MobiDBLite consensus disorder prediction 532 615 - -
Cmo09g00343 682 ProSiteProfiles IQ motif profile. 304 332 IPR000048 GO:0005515
Cmo09g00343 682 PANTHER IQ-DOMAIN 5-RELATED 239 630 - -
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 306 325 IPR000048 GO:0005515
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Cmo09g00343 682 Pfam IQ calmodulin-binding motif 328 345 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00343 - - - csv:101210019 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00343 Cmo-Chr9:1477225 Cmo10g00895 Cmo-Chr10:4380090 5.66E-43 dispersed
Cmo18g00095 Cmo-Chr18:647768 Cmo09g00343 Cmo-Chr9:1477225 1.10E-19 dispersed
Cmo17g00690 Cmo-Chr17:7036672 Cmo09g00343 Cmo-Chr9:1477225 4.92E-56 transposed
Cmo01g01783 Cmo-Chr1:13169419 Cmo09g00343 Cmo-Chr9:1477225 1.77E-133 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00343 Cmo_Chr09 FPKM 3.61698 3.257821 0.391643 0.321852 19.64299 22.48818 21.676912 0.017025 0.0 0.0