Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00348 ATGGAGACCGAGAATGCGGAGGAGCTCGCATCGTCGACGGCTCCCACTCTCCTTCCACTCGCGTCTGCCGCGCAGCAGCCATATGTGTCGGAGCTCCTTTCTTTCACACTCGATCGTCTAAACAAGGAACCGGAGCTTCTTCAGGTGGATGCGGAGCGAATTCGGAGGCAAATACAAGAGGTGGCAGTGGGCAACTACCGAGCTTTCATTGCCGCCGCCGATGCGTTGCTTGCAATTCGAGAAGAAGTATCTTCCATCGATAAGCATCTTGAAACTTTGATATCTGAGATTCCAAATTTGACATCGGGTAGCACAGAGTTTATTGAATCTGCGGAACAGATTCTGGAGAAGAGGAAGATGAACCAGATATTGCTAACACATCACAGTACTCTGCTTGATTTACTTGAAATTCCTCAGCTTATGGATACGTGTGTAAGAAATGGAAATTATGATGAAGCTCTTGACTTGGAAGCATTTGTCGCAAAACTTTCAACCATGCACCCTAAAGTACCAGTTATTCAAGCACTGGTGTCAGAAGTCAGGCAAACCACCCAATCTCTTCTTTCTCAACTTCTCCAAAAACTTCGCTCAAATATTCAGCTGCCTGAATGTCTCCGCATCATTGGATATCTACGTCGAATTGGAGTATTTAGTGAATATGAAATGCGTTTACAGTTTTTAAGATGCCGAGAGGCATGGCTTACTGGAATTCTCGAAGATCTTGACCAGAGAAATGCTTATGAATATTTGAAAGGAATGATCAATTGTCATAGGACACATCTTTTTGACGTTGTTAACCAATATCGAGCTATATTTGCTGATGATACGTCCGGAAATGAAGAAAACTATGACAGTGGGCTTCTTTTTAGTTGGTCTATGCATCAGATAACTTCTCACTTGAAGACACTCAAAATAATGCTCCCAAAGATAACAGAAGGTGGATCTCTATCAAATATATTGGAACAGTGCATGTACTGTGCTATGGGGCTTGGCTGGGTTGGAATGGATTTTCGTGGTTTGCTTCCTCCACTTTTTGAAGAGGCAGTTCTCAATTTATTTTCAAAAAATATGGGTACTGCAGTTGATAATTTTCAGTTAGTTCTGGATTCCCATCGTTGGGTCCCACTACCAGCTGTTGGCTTTCCGGCAACTACTATTGGTGAGGAAAGTCAGGAAGACGTGACTCCACCTTCATATTTGATGGAACATCCACCTCTTGCTGTTTTTGTGAATGGTGTATCGGCAGCTATGAACGAACTTCGCCATTGTGCCCCTTTGAGTTTGAAACATGTGATAGCTCAAGAACTAATAAAAGGATTGCAGGCTGTTTCGGATTCTTTATTGAGATACAACACAACTCACATGCTAAAAGATAATGAGTCTGGACTTTTCCTCCAGCTTTGCCGCGCATTCATAGAGGTTGCTTATCCCCATTGTGCTACTTGTTTTGGCCGCTGTTATCCGGGCGGGGCGATGATTATATTGGATGCGAAAAGTTTGTATGAAGGCATCGGCCGCCTATTGACCATCTCTTCCTCAAGAAACCTCCCAAAAACGGTCAGTAACGCCGAAGAGAATAACGTTACAGAAAATGGTGATATGCCTGCGCTGGACAATGGAGCTTCATCGGATGCTGATAAGGACCAGAAAAGCCCTTCCTTGCACAGTAATGAAAAACATAGCGAAGGTGAAGAAGCAGAGCAGAGCAATTAA 1713 43.61 METENAEELASSTAPTLLPLASAAQQPYVSELLSFTLDRLNKEPELLQVDAERIRRQIQEVAVGNYRAFIAAADALLAIREEVSSIDKHLETLISEIPNLTSGSTEFIESAEQILEKRKMNQILLTHHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVAKLSTMHPKVPVIQALVSEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQRNAYEYLKGMINCHRTHLFDVVNQYRAIFADDTSGNEENYDSGLLFSWSMHQITSHLKTLKIMLPKITEGGSLSNILEQCMYCAMGLGWVGMDFRGLLPPLFEEAVLNLFSKNMGTAVDNFQLVLDSHRWVPLPAVGFPATTIGEESQEDVTPPSYLMEHPPLAVFVNGVSAAMNELRHCAPLSLKHVIAQELIKGLQAVSDSLLRYNTTHMLKDNESGLFLQLCRAFIEVAYPHCATCFGRCYPGGAMIILDAKSLYEGIGRLLTISSSRNLPKTVSNAEENNVTENGDMPALDNGASSDADKDQKSPSLHSNEKHSEGEEAEQSN 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1505917 1510988 - CmoCh09G003480.1 Cmo09g00348 388350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00348 570 MobiDBLite consensus disorder prediction 519 570 - -
Cmo09g00348 570 MobiDBLite consensus disorder prediction 519 533 - -
Cmo09g00348 570 PIRSF COG8 1 570 IPR016632 GO:0017119
Cmo09g00348 570 Pfam Dor1-like family 29 362 IPR007255 GO:0017119
Cmo09g00348 570 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 7 525 IPR007255 GO:0017119
Cmo09g00348 570 MobiDBLite consensus disorder prediction 543 570 - -
Cmo09g00348 570 SUPERFAMILY Cullin repeat-like 131 348 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00348 K20295 COG8; conserved oligomeric Golgi complex subunit 8 - csv:101211255 1032.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01788 Cmo09g00348 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01788 Cmo-Chr1:13189717 Cmo09g00348 Cmo-Chr9:1505917 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g111 . Blo12g01018 . Bda03g00138 . . Bma04g00122 . . . Cma01g01725 . Car09g00296 . . . Cpe06g00247 . . . . . . . Cla05g01845 . . Cco05g2041 . Cmu05g1843 . Cone4ag1674 Cone7ag1279 . . Lsi04g01414 . . . . . . . . Bpe04g00120 . . Sed11g1825 Cmo01g01788 Cmo09g00348 Cma09g00348 . Car01g01338 . . Cpe02g00271 Bhi09g03133 Tan01g4607 Cmetu07g2154 . Hepe01g1897 Mch11g0428 . . . . . . . . . . . Cme07g00210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006496 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00348 Cmo_Chr09 FPKM 18.076262 17.405195 13.901672 15.648348 16.809753 14.844138 16.062908 13.466298 15.539913 16.118118