Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00354 ATGGGGCGCGTTAACCCCAGAACCAAGCCATCGGTGGCGGGAACCGCCGGTAAATCAGAAAGTCGGCGGATGAGCAACGCGGACCGTTCGGCATACTTCGCTAGGAGAGAGGCGGCGAAGATATTGCGGCGTGTTCTTGAGGGTGATGCTCAACGTCGAGCCGTCGCCTCCATTAAGTCACTCGTTTATGCTCCGTCTGTTCGGAATAAGAAGGGTACATTCGCTCTTGTTTGCAAGACTCTCAAGTACCTCCCTATAATCAAGGAAGTACTGGAGGCTGCTGATTTATTGAGCAACAAATGGAAGAGGCAGAAGGAATTAATTTATGTCATCATGTATGATATCCTCCTAGGCCAGAAAACCCCTTTAGCTGGCGATGCAGAGAAGTTTCTTATGCGGCAGCAAAGCGCTTTACAATCTGTGGTTACACAGCTTTTGTCAAAGAGAAAAGCAAATAATATTGAAGACTTAATAGCCCGTGGTCATAATCCTGGTGTTTCAAGGCCTCGTTTTATCCGTGTGAATACTTTGAAGATGGATGTTCACACTGCAATACAAGAATTAGGCAAAAGATATGCAGTTCAGAAGGATGACATGGTTCCTGACCTCTTGGTACTTCCTCCAGGCAGCGATTTACATGATCATCCATTGGTTGCAGATGGGAGTATCTTCATGCAAGGGAAGGCTAGTTCTATGGTTGCAGTAGCCCTTGATCCCAAGCCAGGATGGGAAGTCCTTGATGCATGTTCAGCTCCGGGTAACAAAACTGTTCACCTTGCCTCTCTCATGAACGGAGAAGGAAGGATCATTGCATGTGAATTGAACGAAAACAGGGTCAAACGCTTACAACATACAATCAAACTATCGGGAGCTTCTAATATAGAAGTTTTGCATGGGGATTTCCTTGCTCTTGATCCAAAAGATCCTTCGTTGTCCAAAGTCCGTGCCATTCTTTTGGATCCTTCCTGCTCTGGCTCTGGAACTGCAGCTGCTAGATTAGATCATTTGCTCCCGTCACATGTTGAAGGGAAGAGCTCTGGGGATGACCTTGAACGACTGGAAAAACTTGCTGCCTTTCAGAGGAAGGCTCTAGCTCATGCATTTTCCTTTCCTGCCGTAGAGAGAATTGTTTACAGCACTTGTTCTGTTCATCAAGTTGAAAACGAAGATGTTGTACAGTCATTATTACCTCTGGCTGAATCGCATGGCTTTCAACTGGAAACTCCGTTCCCACAGTGGCAGCGGCGAGGTCACCCAGTTTTCGCCGGCGCTAACCATTTGCTTCGAACCGACCCCATCGAAGACACAGAAGGATTCTTCATAGCACTATTTAAGAAGCAGAACACGACGCACCCATTTCCCCAAATTTCTAGTAGAGACAAAAGCTCTAGAAATCATGGTGGAAACGACACGACGGAGAAAAATCCACACTCCATCCAAAACCAGAACAAGATCTTGATTATTCTCAAAACAGAGCACAGTAAAATCTTCAAAGTTTCAACATTTCTGCTCAGCACACACTACAGAGGTAACCCCCACATATCGGTTATTACGACAGCAAAAAGGAAAGGGAAAATAAAACACACACGTACACCATGGTGCCATATCTTGAAAACCCATGATCCAAAGTTCAGAAGTAGGAATCCACATCCATAA 1656 45.59 MGRVNPRTKPSVAGTAGKSESRRMSNADRSAYFARREAAKILRRVLEGDAQRRAVASIKSLVYAPSVRNKKGTFALVCKTLKYLPIIKEVLEAADLLSNKWKRQKELIYVIMYDILLGQKTPLAGDAEKFLMRQQSALQSVVTQLLSKRKANNIEDLIARGHNPGVSRPRFIRVNTLKMDVHTAIQELGKRYAVQKDDMVPDLLVLPPGSDLHDHPLVADGSIFMQGKASSMVAVALDPKPGWEVLDACSAPGNKTVHLASLMNGEGRIIACELNENRVKRLQHTIKLSGASNIEVLHGDFLALDPKDPSLSKVRAILLDPSCSGSGTAAARLDHLLPSHVEGKSSGDDLERLEKLAAFQRKALAHAFSFPAVERIVYSTCSVHQVENEDVVQSLLPLAESHGFQLETPFPQWQRRGHPVFAGANHLLRTDPIEDTEGFFIALFKKQNTTHPFPQISSRDKSSRNHGGNDTTEKNPHSIQNQNKILIILKTEHSKIFKVSTFLLSTHYRGNPHISVITTAKRKGKIKHTRTPWCHILKTHDPKFRSRNPHP 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1530462 1535652 + CmoCh09G003540.1 Cmo09g00354 388356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00354 551 CDD AdoMet_MTases 245 333 - -
Cmo09g00354 551 PANTHER BNAA09G04380D PROTEIN 7 464 - -
Cmo09g00354 551 Gene3D Sun protein; domain 3 190 225 - -
Cmo09g00354 551 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 183 446 IPR029063 -
Cmo09g00354 551 PRINTS RNA (C5-cytosine) methyltransferase signature 429 446 IPR023267 GO:0001510
Cmo09g00354 551 PRINTS RNA (C5-cytosine) methyltransferase signature 373 389 IPR023267 GO:0001510
Cmo09g00354 551 PRINTS RNA (C5-cytosine) methyltransferase signature 217 231 IPR023267 GO:0001510
Cmo09g00354 551 PRINTS RNA (C5-cytosine) methyltransferase signature 315 327 IPR023267 GO:0001510
Cmo09g00354 551 PRINTS RNA (C5-cytosine) methyltransferase signature 246 256 IPR023267 GO:0001510
Cmo09g00354 551 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 7 464 IPR023267 GO:0001510
Cmo09g00354 551 Gene3D Vaccinia Virus protein VP39 226 452 IPR029063 -
Cmo09g00354 551 MobiDBLite consensus disorder prediction 1 28 - -
Cmo09g00354 551 MobiDBLite consensus disorder prediction 451 479 - -
Cmo09g00354 551 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 160 447 IPR001678 GO:0008168
Cmo09g00354 551 Pfam 16S rRNA methyltransferase RsmB/F 235 445 IPR001678 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00354 K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] - csv:101212715 831.247
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00354 Cmo-Chr9:1530462 Cmo09g01023 Cmo-Chr9:5457883 3.38E-18 dispersed
Cmo01g01371 Cmo-Chr1:10796901 Cmo09g00354 Cmo-Chr9:1530462 2.13E-13 transposed
Cmo01g01796 Cmo-Chr1:13236860 Cmo09g00354 Cmo-Chr9:1530462 3.46E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008710 0 4 1 1 0 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00354 Cmo_Chr09 FPKM 8.015037 7.299891 12.300784 12.124016 12.826042 13.758931 13.446718 33.344006 31.959738 30.875694