Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00355 ATGACAAGGTCATTATCGTCTATTGACTCCGTCAACTTCCAGAATCCAAACGAGGAATGCGACAGAAGCTCCTGGAACCTCCTTCCAGCTCTTCTCAATACTTCCAGAAAATTCGTCCTTCGGTTCCTTAAGTTCATTCACAACACATATAAAACCGAACCAACCGCATCAAACAAGAGGAAGATGGATCTCAGAGTCATGGGCTTGGACTCCCCACTCTTCTCCACCCTCCAGCACGTGATGGACTTCGCCGATGACGCCGACAAGTCTTTCAGCGCCCCGACCCGTACCTACGTCCGGGACGCCAAGGCCATGGCAGCCACTCCGGCCGACGTCAAGGAGTACCCGAATTCCTATGTTTTTGTCGTCGACATGCCGGGGTTGAAGGTTGGTGACATCAAGGTTCAGGTAGAGGAAGACAATGTGCTACTGGTAAGTGGCGAGAGGAAGAGGGAGGAGGAGAAAGAGGGGGCTAAGTACGTAAGGATGGAGAGAAGAGTCGGCAAGTTTATGAGGAAATTTGTGTTGCCGGAAAATGCCAACACGGATGCCATTACGGCGGTTTGTCAGGACGGTGTGCTTACTGTGACTGTGCAAAAGTTGCCACCACCGGAGCCTAAGAAGCCCAAGATCGTTGAGGTCAAGGTCAATTGA 654 51.38 MTRSLSSIDSVNFQNPNEECDRSSWNLLPALLNTSRKFVLRFLKFIHNTYKTEPTASNKRKMDLRVMGLDSPLFSTLQHVMDFADDADKSFSAPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKVGDIKVQVEEDNVLLVSGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDAITAVCQDGVLTVTVQKLPPPEPKKPKIVEVKVN 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1535666 1536418 - CmoCh09G003550.1 Cmo09g00355 388357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00355 217 SUPERFAMILY HSP20-like chaperones 74 211 IPR008978 -
Cmo09g00355 217 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 69 216 - -
Cmo09g00355 217 Gene3D - 70 214 IPR008978 -
Cmo09g00355 217 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 69 216 - -
Cmo09g00355 217 Pfam Hsp20/alpha crystallin family 111 215 IPR002068 -
Cmo09g00355 217 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 101 217 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00355 K13993 HSP20; HSP20 family protein - csv:101212955 235.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01799 Cmo-Chr1:13241940 Cmo09g00355 Cmo-Chr9:1535666 2.82E-47 dispersed
Cmo09g00355 Cmo-Chr9:1535666 Cmo14g01235 Cmo-Chr14:10468467 1.63E-26 dispersed
Cmo01g01797 Cmo-Chr1:13240619 Cmo09g00355 Cmo-Chr9:1535666 2.56E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g127 . Blo12g01022 . . . Bpe02g00501 . . . . . . Car09g00304 . . . Cpe06g00252 . . . . . . . Cla05g01856 Cam05g1981 Cec05g1994 Cco05g2052 Clacu05g1973 Cmu05g1855 Cre05g1980 . . . . . . . . . . . . Bpe14g00274 . . . . . Cmo09g00355 Cma09g00355 . . . . Cpe02g00279 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00355 Cmo_Chr09 FPKM 2.722445 2.82807 74.398666 59.178932 48.152828 50.394096 37.200676 902.870239 1004.840881 845.686096