Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00363 ATGACGAATTGGTGCTGCTTGTGCTTCACCGTTCCAGAAGAAGACGAAAGGGAAGAGGAACTGAAGAAGGAAGGTGAAATGAAACCCATGATGAGTGAGGGGGATTTTGAGAACCAGGATGACTCTGATCGCATTATGCGAAATGGCGATGATTCTGGTGGGAGTAACCCACTTGCGATTGCTGTTGACGGGCCCGACCGCCACGACGGTGATCGGCTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGACGGCGATGGTGGTGTTCATTGGGACCATCAGCTGCGCGGCCGTGGTGGGGCTGTCAATCCCTGGAACTTTTCTTTTGGAATTCTGCATCAGTCTGAGGGAGGAGAGAGCAGTAGCGCCTCTGCTTTGGCCTTGTCTTCTACGATGGAGACTTCTAATGAGGAACGCGATCGGGATGCCCACCATAAGCGCGCTAAAGTTCACTCCATGTTCATTGAGAGCTCATTTGCAACTTCATGGCCTTTGGGTGCTGGAAATCCTGCGAGAGATTTTGATTTTAGTAATGGATCATCTTCAAATATGACTAGGAATGAATATCTATGCCATGGTACTACATCAAGCAGAGTTGATGCCGACAAAGGCTTGGAATCTAGTTTTGATAGAGATGATGGGATAAATGAGAATGACACCTGTAAATCGGAAGGATTTGAAGTAAGGATGGATCTCACAGATGATTTACTGCACATGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCACGAAGATTTCTGGAGTTGAGGATATGTGTGGAAGATATCCAAATGCCACTGAGGTCAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGATGTCCACAACTTAAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAATTGCCCTCTTCTTCATGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGTTGCTATTCGCTCAGCCGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCCAATTGTTCATGTTCTGTAAGATTGACAATGCTGACTGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTAGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCCGTCTCTCTGGATCTTCCTCATTTGCAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGACTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATCACTTCCAATTTTCTTCAAAAGTTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTTTGCAAGATGTGGACCTCACAGACTGTGAGTCACTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGCTGCCCTATGTTGAGATCGCTTGTTCTTGATAACTGCGAGAGTTTGACTGCTGTTCAATTCTGTAGCAGTTCTTTGGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCCCTTGAACTTCAATGTCCTAATCTTGAACAGGTTTCTCTAGATGGCTGTGATCATCTCGAGAGAGCATCGTTTTCCCCAGTTGGTCTGCGGTCATTAAACTTGGGAATCTGTCCCAAATTGAATGAATTAAGAGTTGAGGCCCCTTGTATGGATTTGCTTGAGTTGAAAGGTTGTGGTGGATTGTCTGAGGCGGCCATCAATTGTCCTCGTCTAACATCATTGGATGCTTCCTTTTGTGGCCAACTGAAAGACGAGTGTTTGTCTGCAACGACTGCCTCATGTCCACAGATTGAGTCGTTAATACTGATGTCATGCCCTTCGGTATTGAAACTACAAGCATGCAAGTATTTATCTGACTCATCGCTAGAGCCTCTTTATAAGGAAGGTGCTCTTCCAGCTCTTCAAGAGTTGGACTTATCTTACGGGACGCTCTGTCAATCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACACTTAACTCATGTGAGCTTAAATGGATGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCTTTGTCCAGCATCCCCATTCCTCTTGGTCAAGCCACTCTTGATGAGATTGAGGAACCAGTTGCACAGCCAAATCGTTTGTTACAGAATCTTAACTGTGTAGGCTGTCAGAATATTAGGAAGGTTCTCATTCCTCCAGCTGCACCAAATGTGACAGATAACCCTGCTGATAAACTAGTAGTCGTGCTTAACAAGAACAGAACTGCTCACAAATTGCCTGCTCTAAAAGACAATCCTGGCTTGGCATGCCTTGCTCTTCAGTATATCAAGGCATACCAAGGGAAATGCGACGCGGTCGGAGGTCCCGACGGAATGAAGCCTCCAAATTCTGCATTTACTGAAACATTTGCTCCCAATTGTGGAGTTCTTGTCTCTTCTCTTGCTCCCATCACGGGGCGGTTGCTTGGTTGCCAGTCTAAATATGTTCATGCTCCTGAAGCATTTTCTGATGTTTTGATGCTGAATGAGAAGAGCTTGGAGATTCTCAACTACAAGAACAACACAGAAGTTGGAGCTGCTGTAACTGGCACTGATGGGGGCTCGCCTTACTTTTGGTGTGTGTTGTTCAGCAATGGCAGCCTCTCTAATAGCTTTGCCTTTGAGGGAGGTGTGGCTAAGTTAACGCGGCCTGGTTGCTACAGTGGGGCTAATGACCAATGCAGCAAAGCCAATAGCCAGTTCTTAACCACACGTATGCTGAAAGTTAAGAGCAGAGAAAGAAGAATTTGGAAAGCTAAGCGTTCAAGGGTCCCAGAACATCAAAGAAGCTTTACACTTCAAAACAAATGCAAGAAGCAGAAGAACTATGAATATGCCACAAGAAGAGCCACCAACTCTGTGAATCCAATAAGCATCAAATCTGGCGCATCTCTGTTCCAAGTGAAGCACTCCAGCAATAATGAAGATCAAGGTTATGAGAAGAGCAGGCAACCAGAACCCAAGATTCATGGATGA 3084 45.07 MTNWCCLCFTVPEEDEREEELKKEGEMKPMMSEGDFENQDDSDRIMRNGDDSGGSNPLAIAVDGPDRHDGDRLRLFEDMVRAMHDDGDGGVHWDHQLRGRGGAVNPWNFSFGILHQSEGGESSSASALALSSTMETSNEERDRDAHHKRAKVHSMFIESSFATSWPLGAGNPARDFDFSNGSSSNMTRNEYLCHGTTSSRVDADKGLESSFDRDDGINENDTCKSEGFEVRMDLTDDLLHMSAGSGKLLVLTKISGVEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRCPQLKTLSLKRSNMAQAVLNCPLLHDLDIGSCHKLSDVAIRSAAISCPQLESLDMSNCSCSVRLTMLTVLKLHSCEGITSASMTAISSSSSLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNFLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLRSLVLDNCESLTAVQFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRVEAPCMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVLKLQACKYLSDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSSIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAAPNVTDNPADKLVVVLNKNRTAHKLPALKDNPGLACLALQYIKAYQGKCDAVGGPDGMKPPNSAFTETFAPNCGVLVSSLAPITGRLLGCQSKYVHAPEAFSDVLMLNEKSLEILNYKNNTEVGAAVTGTDGGSPYFWCVLFSNGSLSNSFAFEGGVAKLTRPGCYSGANDQCSKANSQFLTTRMLKVKSRERRIWKAKRSRVPEHQRSFTLQNKCKKQKNYEYATRRATNSVNPISIKSGASLFQVKHSSNNEDQGYEKSRQPEPKIHG 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1573464 1584230 + CmoCh09G003630.1 Cmo09g00363 388365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00363 1027 MobiDBLite consensus disorder prediction 1001 1027 - -
Cmo09g00363 1027 Gene3D Ribonuclease Inhibitor 239 452 IPR032675 -
Cmo09g00363 1027 MobiDBLite consensus disorder prediction 15 66 - -
Cmo09g00363 1027 SUPERFAMILY RNI-like 291 634 - -
Cmo09g00363 1027 Gene3D Ribonuclease Inhibitor 488 573 IPR032675 -
Cmo09g00363 1027 Gene3D Ribonuclease Inhibitor 579 712 IPR032675 -
Cmo09g00363 1027 PANTHER OS10G0396666 PROTEIN 636 758 IPR044703 GO:0010252|GO:1905393
Cmo09g00363 1027 PANTHER OS10G0396666 PROTEIN 250 636 IPR044703 GO:0010252|GO:1905393
Cmo09g00363 1027 PANTHER OS10G0396666 PROTEIN 136 241 IPR044703 GO:0010252|GO:1905393
Cmo09g00363 1027 SUPERFAMILY RNI-like 636 754 - -
Cmo09g00363 1027 MobiDBLite consensus disorder prediction 1010 1027 - -
Cmo09g00363 1027 SMART LRR_CC_2 354 379 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 622 648 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 596 621 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 533 563 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 400 425 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 311 336 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 491 529 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 684 715 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 337 352 IPR006553 -
Cmo09g00363 1027 SMART LRR_CC_2 463 488 IPR006553 -
Cmo09g00363 1027 PANTHER OS10G0396666 PROTEIN 636 758 - -
Cmo09g00363 1027 PANTHER OS10G0396666 PROTEIN 250 636 - -
Cmo09g00363 1027 PANTHER OS10G0396666 PROTEIN 136 241 - -
Cmo09g00363 1027 MobiDBLite consensus disorder prediction 15 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00363 - - - cmo:103493700 867.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00934 Cmo-Chr8:6080116 Cmo09g00363 Cmo-Chr9:1573464 2.65E-38 dispersed
Cmo09g00363 Cmo-Chr9:1573464 Cmo17g00069 Cmo-Chr17:361738 2.92E-40 dispersed
Cmo01g01810 Cmo-Chr1:13290894 Cmo09g00363 Cmo-Chr9:1573464 8.55E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014132 1 1 1 0 1 0 1 0 0 1 1 1 0 0 1 1 0 2 0 1 1 1 0 1 1 1 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00363 Cmo_Chr09 FPKM 8.69609 8.724056 3.044069 3.565498 9.03842 10.39095 8.407328 0.10871 0.0 0.0