Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00366 ATGACACTCTCAATGTCATATCTCTGCCTCAATCTTGATGGGGAAATTTCTCCTTCTGTCGGCAACCTCAAGGGCCTGCAAACCTTGGATTTAAGGGGGAATAGCCTTTCTGGACAAATCCCAGATGAGATTGGTGACTGTTCTTCATTAACAAATCTGGACTTATCGTTTAATGAGATATATGGAGACATACCCTTTTCCATATCGAAATTGAAGCAGCTGGAAATGCTTGTTCTGAAGAACAATCGACTCATTGGGCCGATCCCATCGACATTATCTCAGATTCCAAACTTGAAGGTTTTAGATCTAGCACAGAACAATCTCAGCGGGGAAATCCCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTCTGCGCGGCAACAATTTGGTGGGCGCGCTGTCTCCAGATATGTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAACAGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTAGACCTGTCGTATAATCATCTCACTGGAGAGATACCATTCAACATTGGTTTTCTTCAAGTTGCCACGTTGTCCCTGCAGGGTAATCAGCTATCAGGTCCCATCCCACCGGTAATCGGTCTGATGCAGGCGCTTGCCGTGCTAGATTTGAGCTGCAACATGTTATCTGGTCCAATCCCTTCTATCTTAGGGAATTTGACTTATACTGAGAAACTGTACTTGCATAGCAACAAACTCACCGGGTCCATCCCGGCAGAGCTCGGGAATATGACAAAGCTCCATTATCTGGAACTGAATGATAATCGTCTTACTGGGAATATTCCAGCCGAGCTCGGGAAACTCACCGATTTGTTCGATCTAAACATTGCTAATAACAATCTTGAAGGTCCTATCCCTGATAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATCTTCATGGCAACAAGTTGAATGGAACTATCCCGCCGTCTTTCGAGAAGCTAGAGAGTATGACGTACTTGAATCTCTCCTCTAATGTTCTACGAGGTCCTATTCCAGTCGAGCTATCTCGCATTGGCAATCTCGATACGCTAGACATCTCAAATAACAAAATTAGCAGCACGATTTCTTCATCGTTTGGCGATCTCGAACATCTCCTAAAGCTGAATTTAAGTAGGAATCAATTAACGGGGTCTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGCAAATAGATATTTCACACAATCAGCTCTCTGGGATCATTCCTCAAGAACTGAGTCAACTTCAAAATCTGTTCTCCTTGAGACTTGAAAACAACAATTTATCGGGGGACGTGACGTCGCTGATTAGCTGCCTAAGCCTTACCGAATTAAACGTATCTTACAACAATCTGAATGGTGATATTCCCACAAGCAACAACTTTTCTAGGTTCTCGTCTGACAGTTTTCTTGGAAATCTTGCTCTATGTGGATATTGGAATAGCAACAACTATCCCTGTCATGTGGCTCAGGCGACAGAGCGAGTGACAATATCTAAAGCTGTTATCCTGGGAATTGCTCTTGGTGTCATTGCGATCCTTCTGATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTGATGCTTCACATGAACATGGCACTTCATGTGTATGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATTATTGGATATGGAGCTTCAAGCACAGTCTACAAATGTGTACTCAAGAACTGCAAACCTGTGGCTATCAAGAAGCTCTACTCTCACCAGCCACATAGCATGAAGGGATTCGAGACCGAACTCCAAACCGTGGGTAGCATCAAGCACAGAAATCTGGTCAGCCTCCAAGGATATTCCTTATCTCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAACGGCAGTCTTTGGGATCATCTGCATTGCTCTAGCTCTACCAGGAAGAAAAAGCTGGACTGGGACACTCGGCTCAATATTGCACATGGAGCAGCTCAAGGGCTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTCAAGTCATCAAACATTCTGCTAGACAAGGATTTTGAAGCTCATCTCACTGATTTCGGTATTGCCAAGAGTTTATGTACCTCGAAGACTTATACGTCCACTTACATCATGGGAACTATTGGATACATTGATCCGGAGTATGCTCGTACTTCTCGACTTACTGAAAAGTCCGATGTCTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAGCAGCCAACAATGCTGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCGTTTCAGCTTGCTCTCCTTTGCACCAAGAGGCAGCCATCCGATCGACCGACGATGCACGAAGTAACGCGCGTCATTGAGAGTCTTCTGCCCTCTGCCACAGTGCCAAAACAAACACCAACCATGCCCCCATCTGCAAAATCCCCTTGCTACAGGGACGAGTATACAAATCTAAAAACACCGCACGTGCTGAACTGCCCATCCATGAGCACGTCAGATGCCCAGCTTTTCCTCAAGTTTGGAGAGGTTATTTCACAAAACAGTGAGTAA 2742 44.02 MTLSMSYLCLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCSSLTNLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGALSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLSGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNRLTGNIPAELGKLTDLFDLNIANNNLEGPIPDNLSSCTNLNSLNLHGNKLNGTIPPSFEKLESMTYLNLSSNVLRGPIPVELSRIGNLDTLDISNNKISSTISSSFGDLEHLLKLNLSRNQLTGSIPAEFGNLRSVMQIDISHNQLSGIIPQELSQLQNLFSLRLENNNLSGDVTSLISCLSLTELNVSYNNLNGDIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHVAQATERVTISKAVILGIALGVIAILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVMLHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHQPHSMKGFETELQTVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHCSSSTRKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKAANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIESLLPSATVPKQTPTMPPSAKSPCYRDEYTNLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1609331 1615067 + CmoCh09G003660.1 Cmo09g00366 388368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00366 913 SMART LRR_typ_2 310 333 IPR003591 -
Cmo09g00366 913 SMART LRR_typ_2 358 381 IPR003591 -
Cmo09g00366 913 SMART LRR_typ_2 143 167 IPR003591 -
Cmo09g00366 913 SMART LRR_typ_2 95 119 IPR003591 -
Cmo09g00366 913 SMART LRR_typ_2 406 429 IPR003591 -
Cmo09g00366 913 SMART LRR_typ_2 23 47 IPR003591 -
Cmo09g00366 913 SMART LRR_typ_2 382 405 IPR003591 -
Cmo09g00366 913 SMART LRR_typ_2 262 286 IPR003591 -
Cmo09g00366 913 Gene3D Ribonuclease Inhibitor 1 118 IPR032675 -
Cmo09g00366 913 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 900 - -
Cmo09g00366 913 Pfam Leucine Rich repeat 452 469 IPR001611 GO:0005515
Cmo09g00366 913 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Cmo09g00366 913 CDD STKc_IRAK 588 853 - -
Cmo09g00366 913 SUPERFAMILY Protein kinase-like (PK-like) 559 849 IPR011009 -
Cmo09g00366 913 SUPERFAMILY L domain-like 6 233 - -
Cmo09g00366 913 Pfam Protein kinase domain 585 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00366 913 ProSiteProfiles Protein kinase domain profile. 582 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00366 913 ProSitePatterns Protein kinases ATP-binding region signature. 588 611 IPR017441 GO:0005524
Cmo09g00366 913 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 8 900 - -
Cmo09g00366 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Cmo09g00366 913 SUPERFAMILY L domain-like 192 480 - -
Cmo09g00366 913 Gene3D Phosphorylase Kinase; domain 1 551 657 - -
Cmo09g00366 913 Gene3D Transferase(Phosphotransferase) domain 1 658 864 - -
Cmo09g00366 913 Pfam Leucine rich repeat 360 419 IPR001611 GO:0005515
Cmo09g00366 913 Pfam Leucine rich repeat 73 132 IPR001611 GO:0005515
Cmo09g00366 913 Pfam Leucine rich repeat 216 275 IPR001611 GO:0005515
Cmo09g00366 913 Pfam Leucine rich repeat 291 347 IPR001611 GO:0005515
Cmo09g00366 913 Gene3D Ribonuclease Inhibitor 119 193 IPR032675 -
Cmo09g00366 913 SMART serkin_6 582 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00366 913 Gene3D Ribonuclease Inhibitor 194 501 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01064 Cmo-Chr2:6488469 Cmo09g00366 Cmo-Chr9:1609331 4.51E-33 dispersed
Cmo09g00366 Cmo-Chr9:1609331 Cmo19g00384 Cmo-Chr19:3843920 0 dispersed
Cmo19g00681 Cmo-Chr19:7223032 Cmo09g00366 Cmo-Chr9:1609331 4.96E-25 dispersed
Cmo01g01757 Cmo-Chr1:13060288 Cmo09g00366 Cmo-Chr9:1609331 2.51E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74558 PF00069 Pkinase 5.30E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00366 K20718 - csv:101214398 1673.29