Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00372 ATGGGTATGAAGAGGAAGTTGACATGGAAATCGATGATCGTTCCGAGTTGTTACACGGCGGCGCTCCGCCGTCTATCGGAGTCCGATGATGACGAGCGGCGGCGGGTTTCTAAAAAAGCTTCGTCGCAGAGGCTGTCGCTGTCGGACGCCAGTAACCCGAGTTCGGTCTTGTCGATCGACGACTTGTCGAATTCTCTTGTCGGACCGAAGCTTCATATTTTTTCCTTTGCGGAACTTCGAACCATCACTCACAATTTCGCTTCGTCCAATTTGCTTGGTGAAGGCGGGTTCGGTCCGGTCTACAAAGGGTTCGTGGATGATAAAATCAAACCGGGTTTGGAAGCTCAGCCGGTCGCCGTTAAATTGCTCGACCTCCATGGATCTCAAGGCCATAAAGAATGGCTGGCAGAGATTATAATTCTAGGGCAAATGAGGCATCAAAATTTGGTGAAACTAATCGGTTACTGTTGGGAAGAAGATTACAGACTTCTGGTTTACGAGTATATGGCCAGAGGCAGTTTAGAAAACCAGCTCTTTAGAAAGTATTCAGCTGCTTTACCTTGGTCAACGAGGATGAAAATTGCTTTAGAAGCAGCCAAAGGCCTTCAATTCCTTCACGAAGCCGATCCACCCGTTATATTCAGGGATTTCAAAACCTCTAATATCCTCTTGGATTCTGATTATACAACGAAGCTTTCAGATCTTGGGTTAGCTAAAGATGACGTTGACTGTGAAGACCAACCAGACACGTCTTGTATTATGGGAACTCGAGGCTATGCCGCTCCCGAGTACGTCAAATCTGGCCATTTGACGACGATGAGTGACGTGTACAGCTACGGCGTCGTTCTACTAGAGCTGCTGACGGGGAAGCGGTCAATGGACCGAAAGATTGGCGAGTTTCTAGTGGACTGGGCTAAGCCATTTCTAAAGGACTCGAAACGGCTCTACCGGATCATGGACCCAAAGCTCGAGGGCATGTACTCGGCCGACGGCGCACGTAAGGCTGCCGCCTTAGCTCATAAATGCTTGAGCCGCAGCCCCAAGCGACGGCCTTCCGTGACGGAAGTTGTTGACGTGTTGAAGTCTTTGCAAGACTTTAACGACGTGTGCACGGAGCCGTTTGTTTACGTGGTGGAGGACTGCGGCGGGGAGAAGGAGAAGAAGGGGAGAGATGGGAGAGTTATTGAAGGGAACGGGCTTGGGCTTGGTGGGCTGGGCCTAGGCCTGAATTGGAAAAATTGGAGGCCCATCTCTGTATGA 1260 50.16 MGMKRKLTWKSMIVPSCYTAALRRLSESDDDERRRVSKKASSQRLSLSDASNPSSVLSIDDLSNSLVGPKLHIFSFAELRTITHNFASSNLLGEGGFGPVYKGFVDDKIKPGLEAQPVAVKLLDLHGSQGHKEWLAEIIILGQMRHQNLVKLIGYCWEEDYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDDVDCEDQPDTSCIMGTRGYAAPEYVKSGHLTTMSDVYSYGVVLLELLTGKRSMDRKIGEFLVDWAKPFLKDSKRLYRIMDPKLEGMYSADGARKAAALAHKCLSRSPKRRPSVTEVVDVLKSLQDFNDVCTEPFVYVVEDCGGEKEKKGRDGRVIEGNGLGLGGLGLGLNWKNWRPISV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1632559 1634386 + CmoCh09G003720.1 Cmo09g00372 388374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00372 419 MobiDBLite consensus disorder prediction 29 53 - -
Cmo09g00372 419 SUPERFAMILY Protein kinase-like (PK-like) 64 360 IPR011009 -
Cmo09g00372 419 Pfam Protein kinase domain 88 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00372 419 ProSiteProfiles Protein kinase domain profile. 86 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00372 419 Gene3D Phosphorylase Kinase; domain 1 67 168 - -
Cmo09g00372 419 PANTHER OS01G0588500 PROTEIN-RELATED 32 390 - -
Cmo09g00372 419 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 32 390 - -
Cmo09g00372 419 Gene3D Transferase(Phosphotransferase) domain 1 169 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00372 - - - csv:101218136 739.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00372 Cmo-Chr9:1632559 Cmo10g00797 Cmo-Chr10:3712738 5.78E-158 dispersed
Cmo01g01752 Cmo-Chr1:13034737 Cmo09g00372 Cmo-Chr9:1632559 0 wgd
Cmo11g00746 Cmo-Chr11:3638468 Cmo09g00372 Cmo-Chr9:1632559 3.35E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74559 PF00069 Pkinase 8.70E-46 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00372 Cmo_Chr09 FPKM 11.038445 11.481692 12.609337 11.198949 5.683223 4.503709 5.940053 9.85777 10.64426 11.989912