Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00373 ATGGCAGTCGGTGTGAGAGTTGCCGGGAGTATTATCGGCCGCGATCGAGTTCTCACGGCGGTTATTGCCGGAGCGTCCAGTCTTTCGTTCGTGGGATCAGGATTCATAGTGCTGTGTTACGTCCTCTTCAAAGAACTTCGCAAGTTCTCCTACAAGCTTGTCTTCTATCTTGCCCTTTCCGATATGCTTTGCAGTTTCTTCACTATGATTGGGGATCCGGCTACAGGATTTTACTGTTATACTCAGGGCTATAGCACTCATTTCTTTTGTGTGGCATCGTTCTTGTGGACCACAACAATTGCATTCACCCTTCACCGTACTGTTGTTAGACACAAAACCGACGTTGAAGATTTGGAGGCTATGTTTCACTTATATGTATGGGGAACATCGTTAGTGTTGACTGTTATACGTTCAATTAGTAATAACCATGGACATTTGGGTACCTGGTGTTGGGCACAGTCTAGTCGTACAGGAAAGGCTGTTCACTTTATAACATTTTACATGCCACTCTGGGGTGCAATTCTCTACAATGGGTTTACTTACCTTCAAGTGATACGCATGCTTAATAATGCTACCCGTATGGCAGTTGGCATCTCAGATAGGGCTTACCAGGGAGATGATTGTTTTGTTTTTGGCACTCAATGTGTTGTCTTGTCAGTAATCCAGAATTATACTTTAGCTTTAAACAGATGGGGATATTATCCGCTCATCCTCATAGGGTCATGGGCTTTTGGTACAATCAACCGCATTCATGATTTTATTGAGCCAGGTCATAAAATCTTCTGGCTGTCAGTTCTTGATGTTGGGATGGCTTCACTAATGGGCTTGTTCAATTCAATAGCATATGGTCTGAATTCTTCTGTACGGCGGGCAATTTATGAAAGATTAGACTTGTTTTGGCCTGAGAAGCTTCGAAGATGGCTCCCCAACAATTCAAGGTTCCGGAATCAAGAACAAGAAGGTGAACTGGTTTCCTTGAGAAGTCTAGATCAGCCATAG 999 43.54 MAVGVRVAGSIIGRDRVLTAVIAGASSLSFVGSGFIVLCYVLFKELRKFSYKLVFYLALSDMLCSFFTMIGDPATGFYCYTQGYSTHFFCVASFLWTTTIAFTLHRTVVRHKTDVEDLEAMFHLYVWGTSLVLTVIRSISNNHGHLGTWCWAQSSRTGKAVHFITFYMPLWGAILYNGFTYLQVIRMLNNATRMAVGISDRAYQGDDCFVFGTQCVVLSVIQNYTLALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLSVLDVGMASLMGLFNSIAYGLNSSVRRAIYERLDLFWPEKLRRWLPNNSRFRNQEQEGELVSLRSLDQP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1635329 1639448 + CmoCh09G003730.1 Cmo09g00373 388375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 276 292 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 18 33 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 35 49 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 96 114 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 258 275 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 228 249 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 51 73 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 81 94 IPR022340 -
Cmo09g00373 332 PRINTS Putative plant GPCR, GCR1, signature 119 134 IPR022340 -
Cmo09g00373 332 Pfam Slime mold cyclic AMP receptor 21 171 - -
Cmo09g00373 332 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 18 286 IPR017981 GO:0004888|GO:0007166|GO:0016021
Cmo09g00373 332 PANTHER TRANSMEMBRANE PROTEIN 116 15 323 - -
Cmo09g00373 332 PANTHER G PROTEIN-COUPLED RECEPTOR 157-RELATED 15 323 - -
Cmo09g00373 332 PRINTS GCR1-cAMP receptor family signature 79 97 IPR022343 -
Cmo09g00373 332 PRINTS GCR1-cAMP receptor family signature 234 252 IPR022343 -
Cmo09g00373 332 PRINTS GCR1-cAMP receptor family signature 266 285 IPR022343 -
Cmo09g00373 332 PRINTS GCR1-cAMP receptor family signature 29 47 IPR022343 -
Cmo09g00373 332 PRINTS GCR1-cAMP receptor family signature 48 63 IPR022343 -
Cmo09g00373 332 SUPERFAMILY Family A G protein-coupled receptor-like 17 303 - -
Cmo09g00373 332 Gene3D - 15 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00373 K22987 GCR1, CRLA; cAMP receptor-like G-protein coupled receptor - csv:101216480 598.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01688 Cmo09g00373 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01751 Cmo-Chr1:13028899 Cmo09g00373 Cmo-Chr9:1635329 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g174 Blo01g01438 . Bda01g00644 . . Bpe02g00515 . Bma01g02189 . . Cma01g01606 . Car09g00321 . . . Cpe06g00265 . . . . . . . Cla05g01637 Cam05g1746 Cec05g1756 Cco05g1812 Clacu05g1738 Cmu05g1623 Cre05g1750 Cone4ag1705 Cone7ag1621 . . Lsi04g01377 . . . . . . . . . . . Sed13g1922 Cmo01g01688 Cmo09g00373 Cma09g00372 . Car01g01310 . . Cpe02g00297 Bhi09g03068 Tan01g3494 Cmetu07g1418 . . . . . . . . . . . . . . Cme07g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004383 1 3 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 6 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00373 Cmo_Chr09 FPKM 9.878981 8.239746 11.360206 0.0 6.975806 8.389696 8.907595 13.974545 13.392328 16.670893