Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00377 ATGGATCCCTTCGATTTGTTTCGGAAAGATTTTCCGGCTAAGCAAATAATGAATGTGTCGAAGAAAGGAACGCAAACCAACGAGGCAAACCTAAGCATTGGAAGCAAGGTGACAGCTTTGAATCCGAATGCTGCTGAGTTTATTCCGTTCGCCCTCAGAGCACCTTCAGTTGGAAGTAGTAGTGTGCCAGATTTGACTGAAAGATTTTCGTCTTCTGGGACGTTAGGAAAAGCTGTTCTAGATAGGACCGAGTCATCTGTGTCTAATAATTCTGATGACGAATCTCGTCAATTCTGGAGGCACCAGCTACCTGATGATATCATACCTGATTTCAAGTCAATGGGAGAAGATGAGAACCTATCTCTTGGAAATATTTCGTTGGCAGGCTTATCGTTGCATGATGACAACGAAGCCCCTTTATTCGCGGCTACTGTTGGCAGTGAATATTTGTTGAATGATCAGCAACATTCAAATCTAAATCACTTTAATGGAAATCAATTTGCTGATAGGTTCAGATTCTCGACTGCTTCGTATGGAGAAGATCCATCTGCAGCTAGTCTTTTCCAAATTTCGAATAAACCTTGGCAGAAGCCAGTTCACAACAGTAATGTACTGGTTAGCAATGACCGGCACCTTCCTTATCATGGAAATACTGTGAGGGGATCAACCATGGAAGTCTTGAGTGAGCAAACAACTATGGATGAAAGTGATACTCTGAACCCTGTTGATTTCTTGGCTTTACAGTTCCCTGGCTTTGCTGCCGAAAGCCTCGCAGAAGTTTACTTTGCCAATGGAGGTGACTTAAACCTGACTGTTGAGATGCTCACTCAATTAGAGTTTGAACTATTTGATCTGTATGGCATGCTTTTGCTTTGTCAAGAACTCCGATGTCCTTGTTGTATGAAGAGTTTGCCAGCCAGTTTTCGTTGTCTGCACCGTGTTCTCCTTCAAGTCGATGGTGGGATAAGTCAAAATCTGAATTCCAAGACAATGTCTGCCCCCAATCTTAGTGGAATGGACTTTCCTGCACTTACAGTGTCAGGTGGTCAAAATGGTCATCCAAAATTTGATGGGGCTGATCTTCAACAAAGCACCAGTCCTTATCTTTCTTCTGATAAGGACGACATGCTTTTCTTCAAGCCGAGCACCTCCCCATCTAGAGGTGCTATTGATTTTGCTTCCACTGTCAGGAAATTAGCATCTCAGGATTCTGGTATGTGGAAGTACAATGGACACGGTTCTGCTGATGACTCTATTGGATCAAGTAGAAGTTCTCATAATTTAGGCGGTAAGTACACTACTGGTGGTCATGGGAAAGACACCTATAGTGAAAGGTTGCTCCACCGGGGTTCAGCTCGGGCTGCACCCGTTTGGCTCGAAACAGGCGAATCAGTTGGAAACATGTATTCTGAGCAGCGGGAGGAAGCACGTGATCATGCACGCCTTCGAAATGCATATTTTGAGCAGGCACGGCAAGCATACCTCATTGGTAATAAGGCTTTAGCAAAGGAGCTGAGTGTTAAGGGACAGTTTCATAATGTGCACATGAAGGCAGCTCATGGAAGGGCCCAAGATTCTATATATCGGCAGAGACTCGAACAAGGTCGATTCAGGAATCAAATTGGCGCAGACAACCAGGGAAATGGAAGGGGACACGAACGCATGATCGACCTGCACGGGCTGCATGTTAGCGAAGCGATTCATGTCCTGAAGCACGAGCTGAGTGTGCTGAGGGGTACTGCTCGGGCCGCTGGACAACGTCTGCAGGTTTATATTTGTGTTGGAACAGGACACCACACCCGCGGCTCCCGCACTCCTGCTAGACTTCCAGTGGCTGTACAGAGATATTTGATCGAAGAAGAAGGCCTCGACTTCAGTGAGCCGCAACCGGGGCTGCTTAGAGTTGTGATATATTGA 1917 45.8 MDPFDLFRKDFPAKQIMNVSKKGTQTNEANLSIGSKVTALNPNAAEFIPFALRAPSVGSSSVPDLTERFSSSGTLGKAVLDRTESSVSNNSDDESRQFWRHQLPDDIIPDFKSMGEDENLSLGNISLAGLSLHDDNEAPLFAATVGSEYLLNDQQHSNLNHFNGNQFADRFRFSTASYGEDPSAASLFQISNKPWQKPVHNSNVLVSNDRHLPYHGNTVRGSTMEVLSEQTTMDESDTLNPVDFLALQFPGFAAESLAEVYFANGGDLNLTVEMLTQLEFELFDLYGMLLLCQELRCPCCMKSLPASFRCLHRVLLQVDGGISQNLNSKTMSAPNLSGMDFPALTVSGGQNGHPKFDGADLQQSTSPYLSSDKDDMLFFKPSTSPSRGAIDFASTVRKLASQDSGMWKYNGHGSADDSIGSSRSSHNLGGKYTTGGHGKDTYSERLLHRGSARAAPVWLETGESVGNMYSEQREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQFHNVHMKAAHGRAQDSIYRQRLEQGRFRNQIGADNQGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARAAGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLRVVIY 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1647804 1651316 + CmoCh09G003770.1 Cmo09g00377 388379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00377 638 SUPERFAMILY SMR domain-like 554 636 IPR036063 -
Cmo09g00377 638 CDD CUE_CID7_like 239 281 IPR041806 -
Cmo09g00377 638 Gene3D - 516 637 IPR036063 -
Cmo09g00377 638 ProSiteProfiles Smr domain profile. 556 638 IPR002625 -
Cmo09g00377 638 MobiDBLite consensus disorder prediction 415 431 - -
Cmo09g00377 638 SMART SMR_2 553 638 IPR002625 -
Cmo09g00377 638 MobiDBLite consensus disorder prediction 414 437 - -
Cmo09g00377 638 Pfam Domain of unknown function (DUF1771) 469 531 IPR013899 -
Cmo09g00377 638 SMART DUF1771_2 468 533 IPR013899 -
Cmo09g00377 638 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 17 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00377 - - - cmo:103493901 1016.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00377 Cmo-Chr9:1647804 Cmo20g00373 Cmo-Chr20:1827518 7.75E-06 dispersed
Cmo01g01747 Cmo-Chr1:13018731 Cmo09g00377 Cmo-Chr9:1647804 0 transposed
Cmo01g01746 Cmo-Chr1:13018218 Cmo09g00377 Cmo-Chr9:1647804 3.22E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g176 . . . . Bpe02g01566 . . . . . Cma01g01694 . . . . . Cpe06g00267 . . . . . . . Cla05g01639 Cam05g1749 Cec05g1758 Cco05g1814 Clacu05g1740 Cmu05g1625 Cre05g1752 Cone4ag1707 Cone7ag1624 Cone17ag0953 Cone20ag0297 Lsi04g01375 . . . Blo17g00269 Blo18g00255 Bda01g01353 Bda13g01583 Bpe14g00285 . Bma01g00905 Bma02g00334 . . Cmo09g00377 Cma09g00375 . Car01g01308 . . Cpe02g00299 Bhi09g03065 . . . Hepe01g1926 Mch11g0464 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004395 2 0 1 2 2 1 1 1 1 1 1 1 2 0 1 3 1 4 1 1 1 1 1 1 1 1 1 5 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00377 Cmo_Chr09 FPKM 2.900139 3.140912 1.884656 1.714034 10.732169 11.504984 10.634924 1.682537 1.829226 1.892275