Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00379 ATGCCCCCCGTCAACGCCGCCGTCCACCGCCGCCACCAGTCCTCTGCATCCCAGTTACCTCAATTCCACACACCTACTAATGCTGGCGATGACGACGATCTTCTTCCTTCCACCCAGACAGTTCTCTCATCGCGATCTTCAACCTCTCATAAACCCTTAGCGACCTCCGACTTATCGCTCCACATTCGCGCTTCCAAGAGGCCGAAGCGTTCTGCTCCGACGGCCACTGGACAGGTAAACATTCCCTCTATAACACATTGCGATGTCGGATTTAAGCCAAATTTTGATAGACACGATGGCGCTGCTGCTTTGGATGATGGTGAAGTATTCGGTTCGTCGGAAATGGATTTGGGTTGCAGTTTGGATTTGATACAGCCGAGCATGGTTGGCTGCAGTTACGAAACTCATGATGCAAACTCGGTAGAGGAGATATTTGATGGGGATGGTGATTTTTCTGGTGCGACGGATGAATGTAAGGGGTCGAAGCTAAAGGGGGGCTACTTACTCAATTCGATTGAATCTAGGTTGATGAATTCGAGAGTAGATTGCGATGTTGGAGTCAGTGGCAGTGGAGTTGACAAGGAGAGCAGTGATGATTTTGAGTCGGATAAGGAGCTAGACTTGTTGCTTAATCTGCATTCGCAACTGGATGAGGAAGACCGTATTAGTGGAGTGGGATTTGGTACTGAGGAATCATATTTTCCAGTGGATGAAGATCTGATTCAATGTCCTCTTTGTGGAGTTGATATTTCTGATCTTAGCGACGAGCAACGTCTTGTACACACAAATGATTGTATTGACAAAGAGGACGCCCAAGCTCAAACTGCTGCTCTCACCCCTGATAAAAAGCAAACTTCAGGGCCTCAACAATCTGCTGATAAATCCAGATTTTCAACTGTTCTCAAATGGTTGCATGATCTTGGTTTATCGAAATATGAAGATATTTTTGTTAGGGAGGAGATCGATTGGGAAACATTACAGTGGTTGACTGATGAGGTGTGCTTCTTCAAGGATCTCAATAATGTGGGTATTACTGCACTTGGCCCCAGAAGGAAGATCACACGTGCTTTGTCCGAACTCAGAAAAGAATCTTCTGCAGTTGAAACTTGCACGAATACACATGCCCCTTCTGGTACTGGGCAACATAGTAACAATGGTTCAGATGGATGTGAAGAATCAACCAATGGAACTAATAGAACACCTACGAACAAGTTGATTACTGATTATTTCCCAGGCTTTGCCACTAATAAGAAGAATGCATGCAGCATTTCTACTGGTCAGAGAGATGTGGGAAAAAAGTTACCTGACTCTCTTAACAAAGATAAAAGTAAAACTGCAAAGAGAAATGTTAGAAATGAGAAGCTTGGGAATGTTCCAGTCTGGAGTTGTATACCAGGGACACCATTTAGAGTGGTGAGTAATTCTAATTTGATGAACAGAATTGTATGTATTGCATTAACATGGCCTTTGGGTGAGAAAGAAAATAATGTCTTTATGGAGATCGTCTTTATTCCTGTTCAATACATTTCGATATTACCACTTCTTGTTAAAAGAATGGTTATGACAAATTCCATTGTTAAGTGCTACATATTGTTATATCTGCAGGATGCTTTTCGACATCTTAGAGGAGACTGTTCCCATTGGTTTCTTACTCACTTTCACATGGATCATTATCAAGGTTTAACAAAGTCATTTCGTCATGGAATGATTTATTGTTCGCCTATTACGGCAAAGCTGGTAAACATGAAGCTTGGAATCCCATGGGAAAGGTTACAAGTTTTACCTCTCAACCAAAAAGTTAACATTGCGGGAACAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCCAGTGGTAAGGCTGTTCTACATACAGGGGACTTCCGATATTGTGAGCAAATGGGAAGCTTGTCGGTTTTTCAAACATGTCGTATCCATACTCTGATCCTTGATACCACTTATTGTGATCCACAGAATGATTTCCCAAAGCAGGAGACCGTTATACAGTTTGTAATTGATGCCATTCAAGCTGAAGCTTTCAACCCTAAAACCCTTTTCCTGATTGGATGTTATACCATCGTCTTAGCTTTAACTTCGTGCTGTGACTTCATGGCCTGCATTTTTTTTGCTTCATGTTGTTGGTCATGGGATATACTTATGGCTTCTCTTTCTGTTTCTAAATTTGTGGCACGGACTACTAAATATCTTCAGCTATTCCTAACAGGAAAGGAACGACTTTTTTTGGAAGTTGCCCGCGTTCTGCACAAGAAGGTGTATGTAAGTTCAGCAAAGTTACGCATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGAACGGGAAAGTCACATACATGTCGTACCTCTGTGGACACTTGCGAGCTTCAAACGACTGAAGCATTTATCAAATCAATATGCAAGTCGATTCAGTCTTATAGTTGCTTTCTCTCCCACCGGCTGGGCACTTTCAAAAGGAAAGAAGAAATCTCCTGGAAGAAGGTCGCAGCAAGGTACAATTATAAGATACGAAGTGCCATATAGTGAGCATAGCAGCTTCTCAGAACTGAAGGATTTTGTAAAGCTTGTCTCTCCTGTAAACATAATACCAAGTGTGAATAATCATGGACCTGACTCAGCCCGTGCCATGATCTCGCTTTTGTCATCTTGA 2712 42.44 MPPVNAAVHRRHQSSASQLPQFHTPTNAGDDDDLLPSTQTVLSSRSSTSHKPLATSDLSLHIRASKRPKRSAPTATGQVNIPSITHCDVGFKPNFDRHDGAAALDDGEVFGSSEMDLGCSLDLIQPSMVGCSYETHDANSVEEIFDGDGDFSGATDECKGSKLKGGYLLNSIESRLMNSRVDCDVGVSGSGVDKESSDDFESDKELDLLLNLHSQLDEEDRISGVGFGTEESYFPVDEDLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDAQAQTAALTPDKKQTSGPQQSADKSRFSTVLKWLHDLGLSKYEDIFVREEIDWETLQWLTDEVCFFKDLNNVGITALGPRRKITRALSELRKESSAVETCTNTHAPSGTGQHSNNGSDGCEESTNGTNRTPTNKLITDYFPGFATNKKNACSISTGQRDVGKKLPDSLNKDKSKTAKRNVRNEKLGNVPVWSCIPGTPFRVVSNSNLMNRIVCIALTWPLGEKENNVFMEIVFIPVQYISILPLLVKRMVMTNSIVKCYILLYLQDAFRHLRGDCSHWFLTHFHMDHYQGLTKSFRHGMIYCSPITAKLVNMKLGIPWERLQVLPLNQKVNIAGTDVTCFDANHCPGSIIILFEPPSGKAVLHTGDFRYCEQMGSLSVFQTCRIHTLILDTTYCDPQNDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIVLALTSCCDFMACIFFASCCWSWDILMASLSVSKFVARTTKYLQLFLTGKERLFLEVARVLHKKVYVSSAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHLSNQYASRFSLIVAFSPTGWALSKGKKKSPGRRSQQGTIIRYEVPYSEHSSFSELKDFVKLVSPVNIIPSVNNHGPDSARAMISLLSS 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1655281 1661484 + CmoCh09G003790.1 Cmo09g00379 388381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00379 903 MobiDBLite consensus disorder prediction 367 401 - -
Cmo09g00379 903 Pfam SAM domain (Sterile alpha motif) 294 361 IPR001660 GO:0005515
Cmo09g00379 903 MobiDBLite consensus disorder prediction 425 448 - -
Cmo09g00379 903 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 532 702 - -
Cmo09g00379 903 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 241 471 - -
Cmo09g00379 903 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 750 900 - -
Cmo09g00379 903 MobiDBLite consensus disorder prediction 1 79 - -
Cmo09g00379 903 Gene3D - 729 864 - -
Cmo09g00379 903 MobiDBLite consensus disorder prediction 277 293 - -
Cmo09g00379 903 ProSiteProfiles SAM domain profile. 295 363 IPR001660 GO:0005515
Cmo09g00379 903 MobiDBLite consensus disorder prediction 10 55 - -
Cmo09g00379 903 Gene3D - 290 374 IPR013761 -
Cmo09g00379 903 MobiDBLite consensus disorder prediction 273 293 - -
Cmo09g00379 903 Pfam DNA repair metallo-beta-lactamase 786 889 IPR011084 -
Cmo09g00379 903 CDD SAM_superfamily 300 359 - -
Cmo09g00379 903 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 750 900 - -
Cmo09g00379 903 MobiDBLite consensus disorder prediction 433 448 - -
Cmo09g00379 903 SUPERFAMILY Metallo-hydrolase/oxidoreductase 543 886 IPR036866 -
Cmo09g00379 903 SUPERFAMILY SAM/Pointed domain 294 362 IPR013761 -
Cmo09g00379 903 CDD SNM1A-1C-like_MBL-fold 536 666 - -
Cmo09g00379 903 Gene3D - 527 693 IPR036866 -
Cmo09g00379 903 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 532 702 - -
Cmo09g00379 903 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 241 471 - -
Cmo09g00379 903 SMART SAM_4 292 363 IPR001660 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00379 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00438 Cmo-Chr1:2131311 Cmo09g00379 Cmo-Chr9:1655281 1.93E-52 dispersed
Cmo09g00379 Cmo-Chr9:1655281 Cmo19g00982 Cmo-Chr19:8824433 1.92E-26 dispersed
Cmo09g00379 Cmo-Chr9:1655281 Cmo11g00232 Cmo-Chr11:1156101 1.55E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00379 Cmo_Chr09 FPKM 3.751502 5.129266 7.631483 6.99236 6.219428 4.891727 5.355184 11.572897 10.995624 10.670897