Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00388 ATGGTCTGCGAGATGGAGACTGAGGTTATTGAAGATATGGACATCGAAGCTGTTCCTTCTATGTGGCCTGAGGACGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAAGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATACCTCGCCAAACAGTGGGAGTATAAGCAAGCGAATGCTGTGCGTCTCCTTAGAGAAGAACTTGACATCCTCAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTAGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTCATTCAAAGTAAGGGAGTTGAAATTGATGCAGCGTATGATACAGTGACATACTGGAAGCAGCGAGCAATAGATCTGGAAAAACTGTTGGAAGCAAGCCTACAGCGCGAGCAGATGCTTGGAGAGAAGCTCAGGGAAAACATAAAAAATGTTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTGCTGCAGAATGCACCTGTGGTTTTTGGTCATCAGGACAAAGAAATGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAGATTTTTACTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTGCTAGAGAAAGGGCTACCTGCAAAGAGGGAGATTCAGTTTGATACGGACTTATTTGGGCTTAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAAACAATTGGAATAAATTATGTGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCACATCACGGAGGAGACAATGCGAGCCAAGCAAATGCTAGCAACCATGTCACATGAAATTAGGTCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAGCGACATCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTCGAGTCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTGAAGCATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTTTGGAGGGACGTATAGCAGATGATGTCCCCATAGAGGTCATCGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGTAACGCAATCAAGTTCACTCATCAAGGAAAGGTTGGAATTAACCTTTATGTGCTACCCTATCCACCCATCGGAAAAGGAGAAGAAAGCCCCAAGAAATCAACGGCTGATAACTCAACAGTTCCGGTAAATGGTTGGCAAGAAGGAACATGTCTTCCAGCCCCTCAGAATGGCTCGCGTGGCCAGAAACACGGTGACAGAAATCACTTGCATTTTGATGCACCAGGAACCCCTAGTAAAAGTGAAACCACACAGAATGGAAATAGAGAAAACGAATCTTGTTCACCAGAAACGACGGTATGGATACGGTGTGATGTTTTCGACACAGGAATTGGAATTCCAGAGAATGCATTACCAACCCTTTTTAAGAAGTACATGCAAGCTAGTGCCGATCATGCTCGCAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACATTTACATTTGTTTTGCCATACAAGGTTTCAATCACCTGCAGTCCTTCCGATGATTCCGATGATCTCTCCGACGACGAGTCCACAAATGACGAAATGACTGAGGGCTTCTTCCAATTCCAACCCCACAGTTTCAGTTCTCTAGCATCTTCTAATGGCACAAGGATCATCCCAAACTCAATGTTACATACAACTGGGTATCACACCTCAACCAAACTCAATGGATTTTCTGAACCTTCTTTCCCTATTCCCACGAACAACATCACACCACAAGAGACTGCTTCTCATAGAGATGTCCGTTATGCCAATGCTGCTGCGGTAACCTCAAGCGAATCACAATGTTCATCGAGTCGGATGAACTCAGAGCTTGATAACGAAAACCAACCAGACACTAATGCTCGGTCCCAAAATGTTGGTGTGAATTCAGTTCACAGATCAGAAACAATGAAGCAAGAAAATGGATTGGAAAAGCCAAGTAATAAACTTCTAAAAACAGAACAGGGGAAGGAGAGATCCGATGATGGAAGTAACCATTGCAGAAGTAGCAGTAGTAGTGGTTCTGAAGTCACAATGGGATTGGAACCCAGAATTCTTCTTGTCGAGGATAATAAGACCAATATTATGGTTACTCAATCCATGATGAAGAAGTTCGGCCAAAAAATCCACGTCGTAACTAACGGAATCGAGGCTGTTCGTGCAGTTCAACGCCGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATCCAGCCAACTACGCCTTATTGGACTCCTTCCTCCCGCAGGATACCCATCGTTGCTATGACGGCAAATTCAATGTCAGAAAGCGCTGATGAGTGTTATGAAAATGGTATGGACTCGTTCGTATCAAAGCCAATCTCCTTCCAGAAGTTGAAAGAATGTCTGGAACGGTATTTACCACAACCTCCCTTGTAA 3006 43.01 MVCEMETEVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPRADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVIQSKGVEIDAAYDTVTYWKQRAIDLEKLLEASLQREQMLGEKLRENIKNVEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEMRYRFIYNHFPSLQEEDIIGRTDVEIFTGAGVKESQDFKKEVLEKGLPAKREIQFDTDLFGLKTFLIYVEPVFSKAGETIGINYVGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGKGEESPKKSTADNSTVPVNGWQEGTCLPAPQNGSRGQKHGDRNHLHFDAPGTPSKSETTQNGNRENESCSPETTVWIRCDVFDTGIGIPENALPTLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSITCSPSDDSDDLSDDESTNDEMTEGFFQFQPHSFSSLASSNGTRIIPNSMLHTTGYHTSTKLNGFSEPSFPIPTNNITPQETASHRDVRYANAAAVTSSESQCSSSRMNSELDNENQPDTNARSQNVGVNSVHRSETMKQENGLEKPSNKLLKTEQGKERSDDGSNHCRSSSSSGSEVTMGLEPRILLVEDNKTNIMVTQSMMKKFGQKIHVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIQPTTPYWTPSSRRIPIVAMTANSMSESADECYENGMDSFVSKPISFQKLKECLERYLPQPPL 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1701613 1708743 + CmoCh09G003880.1 Cmo09g00388 388390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00388 1001 MobiDBLite consensus disorder prediction 769 852 - -
Cmo09g00388 1001 Gene3D - 336 434 - -
Cmo09g00388 1001 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 997 - -
Cmo09g00388 1001 Gene3D - 855 996 - -
Cmo09g00388 1001 MobiDBLite consensus disorder prediction 572 590 - -
Cmo09g00388 1001 Gene3D - 435 675 IPR036890 -
Cmo09g00388 1001 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cmo09g00388 1001 SMART HKATPase_4 482 672 IPR003594 -
Cmo09g00388 1001 SMART REC_2 857 992 IPR001789 GO:0000160
Cmo09g00388 1001 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cmo09g00388 1001 Coils Coil 188 208 - -
Cmo09g00388 1001 Pfam Response regulator receiver domain 859 926 IPR001789 GO:0000160
Cmo09g00388 1001 ProSiteProfiles Response regulatory domain profile. 858 996 IPR001789 GO:0000160
Cmo09g00388 1001 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cmo09g00388 1001 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cmo09g00388 1001 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 997 - -
Cmo09g00388 1001 Gene3D PAS domain 203 335 - -
Cmo09g00388 1001 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cmo09g00388 1001 MobiDBLite consensus disorder prediction 769 810 - -
Cmo09g00388 1001 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cmo09g00388 1001 SUPERFAMILY CheY-like 857 997 IPR011006 -
Cmo09g00388 1001 Coils Coil 92 112 - -
Cmo09g00388 1001 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cmo09g00388 1001 Coils Coil 342 362 - -
Cmo09g00388 1001 MobiDBLite consensus disorder prediction 811 839 - -
Cmo09g00388 1001 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cmo09g00388 1001 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cmo09g00388 1001 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cmo09g00388 1001 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cmo09g00388 1001 CDD REC_hyHK_CKI1_RcsC-like 859 992 - -
Cmo09g00388 1001 MobiDBLite consensus disorder prediction 544 590 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01734 Cmo09g00388 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00388 Cmo-Chr9:1701613 Cmo15g00925 Cmo-Chr15:4707929 2.03E-53 dispersed
Cmo01g01734 Cmo-Chr1:12959460 Cmo09g00388 Cmo-Chr9:1701613 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10345 PF02518 HATPase_c 8.70E-28 CL0025 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00388 - - csv:101219807 1689.47