Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00390 ATGTGTTGTGGGCCCGAGAAAGAACGGCTGCCCCAACAAACCAACATCCCAAAAAGTGCAACAAAATCCTCCCCTGTTTCGTTTTCTCCCTTGAACGCTTCTTCTTCTTCTTCTTCCACCAGGTTCCGGTTTGATTTCGGCGGTTCCGCGGGCATTCGAGGAACGCCTTGTTCCTTCCACTTCTGGATTGGAGCTGGCTATGTTCAGAGCCTAGACAACATGGGCTATCTGGATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTTAGCGGCGGGGGACTTAGTCAGAATGGAAAGTTCAGCTATGGATATGCTAGCTCTCCAGGAAAGAGATCTTCGATGGAAGATTTTTACGAGACACGAATCGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGACGGTCATGGCGGAGCACGAGCGGCGGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCGGATACCAAATCTGCTATAGCCGATGCATACAACCACACAGACACGGAATTTCTGAAGTTGGAAAATAATCAAAACAAAGATGCTGGATCAACTGCTTCCACTGCCATCCTGGTTGGTGACCGTTTACTTGTTGCAAATGTTGGTGATTCTAGAGCTGTTATTTCCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATCGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTCTCACGTGCATTTGGGGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCGGAAATTCAGGAGGAAAAGATTGATAGCTCACTCGAGATTCTTATACTTGCAAGCGATGGACTGTGGGATGTCGTCTCTAACGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCTGCAAAGAGGTTGTTACAAGAAGCATGTCAGAGAGGCAGTGCCGATAACATTACTTGCGTCGTCGTCCGTTTCTTGGCGAATCAAGGAAGTTCCTCAGGGTAA 1089 47.57 MCCGPEKERLPQQTNIPKSATKSSPVSFSPLNASSSSSSTRFRFDFGGSAGIRGTPCSFHFWIGAGYVQSLDNMGYLDSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKLENNQNKDAGSTASTAILVGDRLLVANVGDSRAVISRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEILILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLLQEACQRGSADNITCVVVRFLANQGSSSG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1719359 1723794 - CmoCh09G003900.1 Cmo09g00390 388392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00390 362 SMART PP2C_SIG_2 118 353 IPR001932 -
Cmo09g00390 362 ProSitePatterns PPM-type phosphatase domain signature. 138 146 IPR000222 GO:0043169
Cmo09g00390 362 MobiDBLite consensus disorder prediction 12 39 - -
Cmo09g00390 362 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 77 360 - -
Cmo09g00390 362 Pfam Protein phosphatase 2C 136 346 IPR001932 -
Cmo09g00390 362 ProSiteProfiles PPM-type phosphatase domain profile. 107 353 IPR001932 -
Cmo09g00390 362 PANTHER ALPHABET, ISOFORM E-RELATED 77 360 - -
Cmo09g00390 362 SUPERFAMILY PP2C-like 101 353 IPR036457 -
Cmo09g00390 362 SMART PP2C_4 97 351 IPR001932 -
Cmo09g00390 362 MobiDBLite consensus disorder prediction 1 39 - -
Cmo09g00390 362 CDD PP2Cc 106 353 IPR001932 -
Cmo09g00390 362 Gene3D - 99 358 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01732 Cmo09g00390 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02531 Cmo-Chr4:18596607 Cmo09g00390 Cmo-Chr9:1719359 2.25E-121 dispersed
Cmo09g00390 Cmo-Chr9:1719359 Cmo15g00643 Cmo-Chr15:3121936 8.28E-126 dispersed
Cmo16g00270 Cmo-Chr16:1199573 Cmo09g00390 Cmo-Chr9:1719359 7.49E-54 dispersed
Cmo01g01732 Cmo-Chr1:12942300 Cmo09g00390 Cmo-Chr9:1719359 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00390 K17506 - csv:101216117 549.666