Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00393 ATGTCATTTATGGGCCCAGCCCAAGATTCAGGTCGGAGAACGCAGTCATCACTGGAAGTGATTCACCGGCACGGGCCATGCGGCGGCGGAGAATCGAAAGCACCGACGGCCGCGGAATTATTCGTTCAAGATCAGGCTCGAGTGGATTTCATCCACTCGAAATTCTCAGGGGACTTCAAATCCATCGATCGTTTACGGCCGTCGAAGGCCACGAAAATCCCGGCGAAGTCCGGCGCCACCATCGGGTCCGGGAATTACATAGTGAATGTTGCTCTGGGGACGCCGAAGAAGTACTTATCGCTTATATTTGACACCGGCAGCGATCTGACGTGGACTCAGTGCGAGCCGTGTGCCAGATATTGCTACAGCCAGAAGGACCCTGTTTTCGCCCCTTCCCAATCCACCACTTATTCCAACATCACTTGTTCTTCGCCTATCTGCTCTCAGCTTGAATCGGGCACAGGGAACCAACCTGGTTGCTCCGCCGCGAAATCCTGCATTTACGGAATACAATACGGCGATCAATCTTTCTCCGTCGGATATTTCGCCAAAGAAACTTTAACCTTGACGCCCACCGATGTTATCAGCAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGACTCTTCGGCAGCGCCGCCGGTCTCATCGGCCTTGGCCAGGACAAAATCTCCATCGTCAAACAGACCGCCCAAAAGTACGGTCAGATCTTCTCCTACTGCCTCCCTAAAACCTCAAGTTCCACCGGCTACCTAGCCTTCGGCGGCAGTGGCGGTGGCGGCGGTGCTCTGAAATACACGCCGATCACAAAAGCACACGGCGTCGCGAATTTCTATGGCGTCGACATCGTCGGTATGAAGGTCGGAGGAATTCAGATCCCGATCTCGGCGTCGGTCTTCTCGACCTCCGGCGCGATCATCGATTCCGGCACGGTGATTACGCGGCTGCCGCCAGATGCGTACAGCGCCTTGAAATCGGCGTTTCAGAAAGGAATGACGAAGTATCCGAAAGCGCCGGAGCTTTCGATTCTGGACACGTGTTACGATCTGAGCAAATACACCTCTGTAGAGATCCCGAAAGTGGATTTTCTTTTCAAAGGAGGAACGGTACTCGAACTGGACGGCACCGGAATCTTGTACGGAGCATCGACGACTCAGGTCTGTTTGGCATTCGCCGGAAATATGGATCCGAGCTCCGTCGCCATTATTGGGAACGTGCAGCAGAAGACTCTGCAGGTAGTTTACGATGTCGGTGGAGGGAAGATTGGGTTTGGTTATAATGGTTGTTAA 1290 53.57 MSFMGPAQDSGRRTQSSLEVIHRHGPCGGGESKAPTAAELFVQDQARVDFIHSKFSGDFKSIDRLRPSKATKIPAKSGATIGSGNYIVNVALGTPKKYLSLIFDTGSDLTWTQCEPCARYCYSQKDPVFAPSQSTTYSNITCSSPICSQLESGTGNQPGCSAAKSCIYGIQYGDQSFSVGYFAKETLTLTPTDVISNFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAQKYGQIFSYCLPKTSSSTGYLAFGGSGGGGGALKYTPITKAHGVANFYGVDIVGMKVGGIQIPISASVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMTKYPKAPELSILDTCYDLSKYTSVEIPKVDFLFKGGTVLELDGTGILYGASTTQVCLAFAGNMDPSSVAIIGNVQQKTLQVVYDVGGGKIGFGYNGC 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1730747 1733632 - CmoCh09G003930.1 Cmo09g00393 388395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00393 429 Pfam Xylanase inhibitor N-terminal 86 256 IPR032861 -
Cmo09g00393 429 PRINTS Pepsin (A1) aspartic protease family signature 401 416 IPR001461 GO:0004190|GO:0006508
Cmo09g00393 429 PRINTS Pepsin (A1) aspartic protease family signature 305 316 IPR001461 GO:0004190|GO:0006508
Cmo09g00393 429 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Cmo09g00393 429 PANTHER ASPARTYL PROTEASES 10 429 IPR001461 GO:0004190|GO:0006508
Cmo09g00393 429 CDD cnd41_like 85 429 IPR033873 -
Cmo09g00393 429 Gene3D Acid Proteases 62 255 IPR021109 -
Cmo09g00393 429 ProSiteProfiles Peptidase family A1 domain profile. 86 425 IPR033121 -
Cmo09g00393 429 SUPERFAMILY Acid proteases 80 429 IPR021109 -
Cmo09g00393 429 Gene3D Acid Proteases 261 429 IPR021109 -
Cmo09g00393 429 Pfam Xylanase inhibitor C-terminal 279 424 IPR032799 -
Cmo09g00393 429 PANTHER ASPARTYL PROTEASE AED1 10 429 - -
Cmo09g00393 429 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00393 - - - csv:101215397 753.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00393 Cmo-Chr9:1730747 Cmo17g00882 Cmo-Chr17:8027300 8.03E-85 dispersed
Cmo09g00393 Cmo-Chr9:1730747 Cmo08g00572 Cmo-Chr8:3507877 2.92E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g617 . . . . . . . . . . . . Car09g00340 . . . Cpe06g00279 . . . . . . . Cla05g01658 Cam05g1769 Cec05g1777 Cco05g1835 Clacu05g1759 Cmu05g1645 Cre05g1773 Cone4ag1728 Cone7ag1648 Cone17ag0969 . . . . . . . . . . . . . . . Cmo09g00393 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00393 Cmo_Chr09 FPKM 3.889157 3.870155 31.737656 32.217533 49.664795 51.698559 46.541733 27.128319 27.436056 26.700514