Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00404 ATGCAGGCAGATCAGACGGTCATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGCGGAAGCAGATTTTTTACCCCTCGCTTCGATTCCTCCTCCGCTGATTCTTCGTCGCTTCGTCCACATGGCGGTGTTGCTTCAATCCTCAAGGCCGGTGATCTACGGTTCGAAGGTCGTGAGCGAATCCAGTACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCTCTGAGGATATCATGAAGATCAAACTAGAAGTTGAGACTGAGATACTTGGGGAGGATCAAACATGGGCTCGTGCTGAAAGCAATCAGCAATCACAATCTCAAGGCCGTTACTTTGAGCCGGACAGTCGAGATTGGCGTGGTCGATCAGGACAGTTACCCACCACAGAGGAAGGATCTTGGGAGGCAATTCGCGACAACAAGGACTTGACAGGACAATCTTTGCAAGACTCAAATAATAGGACTCAAGTTTCTGGTAACCAAGGGGTGGGTACTGCAGCTGCTCTTATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGATCGTGTTTTGAAGACAGTAAAAGGTATACTCAATAAATTGACTCCAGAAAAGTTTGACGTACTCAAAGGTCAATTGATTGACTCTGGAATTACATCTGCTGATATTTTGAAGGATGTTATTTCACTTATATTTGAGAAGGCCGTGTATGAGCCCACATTTTGCCCTATGTATGCACTTCTGTGCTCCGACCTTAATGAGAAGCTTCCTTCATTTACATCTGATGTGCCTGGGGAGAAAGATATCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAAGCGTTTGAAGGTGCTGATAACCTGAGGGCAGAAATCAGGCAGATGACTAATCCTGATCAGGAAATGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAACTGTTGGGGCCTGACCCCAAAATATGCCCTGCTGAGGAGAATGTTGAGGCTATTAGTCATTTTTTCAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGGCGAGTCAATGATTTGTATTTCAGCCGATTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAAATGGGTACCTAGACGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCTGAGGCTGAAAAGAATTTAGGGCTTCGTCCGGGTTCGACTGCAATGATGAGAAATGGCCGTAATGCTGAGGCACTTGGGGGTCCTGGTGGTTTTCCTGTTGCTGGACCTGGGTTTGGGGGTATGATGCCTGGAATGCCTGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGATTCAGACAATTGGGAGGTTCCTAGATCCCGATCAATGACAAGGGGCGAAAGCGGAGGTCATACTCAGGCTTCTTCGCGTGTCCAGTCATCACTAGTTGGCAAAACATCTTCCATTAATTCTAAATATTTACCTCAGGGAAGTGGTGGTGTAATAACTGGGAAAACAAGTGCTTTGCTACAGGGTAGCGCTGCTGCATCTCCTGCCCGACCAAGTTTCGTGCCTGGAACACAGCCTGTCGCCCACAACCCTAAACCAGTTGCATCAGTCATACCTTCTCCTCAGAAGCCTACAGCTCCTTCTGTAGTATCCAATTCTGCTGATCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTCAGCGTACGGATTCTTGCTGAAGCTCTACAGTGTGTAGAGGAGCTGAAAGCCCCAGCTTATCACCCAGAGGTTGTTAAAGAATCCCTTATCATAGCACTTGAAAAGATTCCACCATGTGTAGATCCAGTTGTTAAGCTTCTTGAGCACTTGCTCCACAAGAATGTCTTTACTGCAAAGGATATTGGCACGGGGTGCCTTCTATATGGGTCATTGATGGATGATATCGCCATCGATCTACCGAAGGCACCAAACAATTTCGGTGAGATTCTCGGGAAGCTAATATTGATCGGGGGCCTGGATTTTGCGGTCGTGAAGGAGATTCTTAAGAAGATGGAAGATAACTACTTCCAGAAATCCATTTTTGGTGGTGCTATGAAGAGCCTCAACTCTAGCCCTTCTGGAGAGGGAATTCTGGCAACTCAAAGTGCTGAGATCCAGGCATGTGAAACTTTACTTGCATGA 2304 46.05 MQADQTVISLRPGGGGGLRGSRFFTPRFDSSSADSSSLRPHGGVASILKAGDLRFEGRERIQYTRDQLLQLREVATVSEDIMKIKLEVETEILGEDQTWARAESNQQSQSQGRYFEPDSRDWRGRSGQLPTTEEGSWEAIRDNKDLTGQSLQDSNNRTQVSGNQGVGTAAALIKAEVPWSVRRGNISEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFEKAVYEPTFCPMYALLCSDLNEKLPSFTSDVPGEKDITFKRVLLNICQEAFEGADNLRAEIRQMTNPDQEMERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISHFFNTIGKQLDESPKSRRVNDLYFSRLKELTANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSTAMMRNGRNAEALGGPGGFPVAGPGFGGMMPGMPGTRKMPGMPGLDSDNWEVPRSRSMTRGESGGHTQASSRVQSSLVGKTSSINSKYLPQGSGGVITGKTSALLQGSAAASPARPSFVPGTQPVAHNPKPVASVIPSPQKPTAPSVVSNSADLHKKTVSLLEEYFSVRILAEALQCVEELKAPAYHPEVVKESLIIALEKIPPCVDPVVKLLEHLLHKNVFTAKDIGTGCLLYGSLMDDIAIDLPKAPNNFGEILGKLILIGGLDFAVVKEILKKMEDNYFQKSIFGGAMKSLNSSPSGEGILATQSAEIQACETLLA 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1776429 1781418 + CmoCh09G004040.1 Cmo09g00404 388406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00404 767 MobiDBLite consensus disorder prediction 101 115 - -
Cmo09g00404 767 MobiDBLite consensus disorder prediction 501 526 - -
Cmo09g00404 767 Gene3D - 597 757 - -
Cmo09g00404 767 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 766 IPR045208 GO:0003743
Cmo09g00404 767 SUPERFAMILY ARM repeat 599 753 IPR016024 -
Cmo09g00404 767 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 766 - -
Cmo09g00404 767 Pfam MA3 domain 603 713 IPR003891 -
Cmo09g00404 767 SMART if4_15 193 418 IPR003890 GO:0003723|GO:0005515
Cmo09g00404 767 ProSiteProfiles MI domain profile. 601 723 IPR003891 -
Cmo09g00404 767 Pfam MIF4G domain 193 418 IPR003890 GO:0003723|GO:0005515
Cmo09g00404 767 Gene3D - 184 419 - -
Cmo09g00404 767 MobiDBLite consensus disorder prediction 101 134 - -
Cmo09g00404 767 MobiDBLite consensus disorder prediction 560 597 - -
Cmo09g00404 767 MobiDBLite consensus disorder prediction 1 22 - -
Cmo09g00404 767 SMART ma3_7 602 714 IPR003891 -
Cmo09g00404 767 SUPERFAMILY ARM repeat 186 421 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01725 Cmo09g00404 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00404 Cmo-Chr9:1776429 Cmo17g00073 Cmo-Chr17:376950 6.10E-07 dispersed
Cmo01g01725 Cmo-Chr1:12910386 Cmo09g00404 Cmo-Chr9:1776429 0 wgd
Cmo10g00493 Cmo-Chr10:2201428 Cmo09g00404 Cmo-Chr9:1776429 0 wgd
Cmo11g00451 Cmo-Chr11:2202868 Cmo09g00404 Cmo-Chr9:1776429 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00404 K03260 - csv:101211356 1239.94