Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00407 ATGGAGGGAGGTGTTCGAGATTCCGCCGTGGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGAAAATGTAGAACAAGTCCAAACTCACCTTATTTCCCTCCTGTCTATCGCCGAGCCGGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGAGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACGCTCTTCGCATTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTATCAACACAGAGCTTGAGAGATTAAGCTTGTATGAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGAACCATTGAAGCGTTCCACTACCTTGAACTATCAAGCAGCTACTCGCTTCATTGAACATTCTCTACCCGATCTAACCCAAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGGAAGGGGCCAAAAATGCAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCTAAGGAATTTCTTGAGAAAGCTGCACGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAAGGACCATTATGTGGGGTTGCTTCAGATGATGAACTGCAGGAGGCCTGA 633 45.81 MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLEKAARELLGDSNGGLQGPLCGVASDDELQEA 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1787192 1788412 + CmoCh09G004070.1 Cmo09g00407 388409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00407 210 MobiDBLite consensus disorder prediction 129 151 - -
Cmo09g00407 210 MobiDBLite consensus disorder prediction 188 210 - -
Cmo09g00407 210 PANTHER SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR 9 198 IPR011082 -
Cmo09g00407 210 PANTHER NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D 9 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00407 K12592 C1D, LRP1; exosome complex protein LRP1 - csv:101211841 362.844
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01721 Cmo09g00407 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01721 Cmo-Chr1:12895114 Cmo09g00407 Cmo-Chr9:1787192 2.72E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g585 . Blo12g01048 . Bda03g00103 . . . . . . Cma01g01673 . Car09g00354 . . . Cpe06g00290 . . . . . . . Cla05g01672 Cam05g1787 Cec05g1793 Cco05g1852 Clacu05g1775 Cmu05g1660 Cre05g1789 . . Cone17ag0977 . Lsi04g01343 . . . . . . . . Bpe04g00087 . . Sed05g1752 Cmo01g01721 Cmo09g00407 Cma09g00403 . Car01g01288 . . Cpe02g00318 Bhi09g03017 Tan01g3551 Cmetu07g0231 . Hepe01g1957 Mch11g0495 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005905 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00407 Cmo_Chr09 FPKM 0.631922 0.0 0.677459 0.0 3.584615 2.851524 3.513183 3.363234 3.002673 2.780791