Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00416 ATGTCGGACGAGGAGCACCACTTCGAATCGAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGTTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGCCATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGCAACACCAAGGATGACTTAAGGCTCCCAACTGATGACAACCTGCTCTCTCAGGTAAAGGCACAATCAGATTCGATATTGCTTAATATTCTGTTCTTTAAGAGATTTTTGAAGATATGGCCATATGGGTTTAATCTTTATATTAAGGATGGTTTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG 570 45.44 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQVKAQSDSILLNILFFKRFLKIWPYGFNLYIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1817752 1821181 - CmoCh09G004160.1 Cmo09g00416 388418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00416 189 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo09g00416 189 PIRSF Transl_init_eIF5A 1 148 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo09g00416 189 PIRSF Transl_init_eIF5A 145 186 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo09g00416 189 Gene3D - 86 138 IPR012340 -
Cmo09g00416 189 SUPERFAMILY Nucleic acid-binding proteins 86 131 IPR012340 -
Cmo09g00416 189 CDD S1_eIF5A 86 185 - -
Cmo09g00416 189 SMART eIF_5a_2 85 183 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo09g00416 189 PANTHER BNAA07G09420D PROTEIN 156 185 - -
Cmo09g00416 189 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Cmo09g00416 189 TIGRFAM eIF_5A: translation elongation factor IF5A 17 124 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo09g00416 189 Gene3D - 153 187 IPR012340 -
Cmo09g00416 189 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 156 183 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo09g00416 189 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 131 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo09g00416 189 Gene3D - 1 85 IPR014722 -
Cmo09g00416 189 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cmo09g00416 189 MobiDBLite consensus disorder prediction 1 21 - -
Cmo09g00416 189 SUPERFAMILY Nucleic acid-binding proteins 156 185 IPR012340 -
Cmo09g00416 189 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 156 185 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo09g00416 189 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00354 Cmo09g00416 CCT
Cmo01g01713 Cmo09g00416 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00416 Cmo-Chr9:1817752 Cmo18g01144 Cmo-Chr18:11697801 3.35E-105 dispersed
Cmo01g01713 Cmo-Chr1:12861126 Cmo09g00416 Cmo-Chr9:1817752 2.48E-112 wgd
Cmo10g00501 Cmo-Chr10:2234753 Cmo09g00416 Cmo-Chr9:1817752 1.09E-67 wgd
Cmo11g00460 Cmo-Chr11:2245677 Cmo09g00416 Cmo-Chr9:1817752 1.29E-105 wgd
Cmo05g00354 Cmo-Chr5:1586049 Cmo09g00416 Cmo-Chr9:1817752 3.95E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00416 K03263 K02180 fve:101296375 308.531