Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00416 | ATGTCGGACGAGGAGCACCACTTCGAATCGAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGTTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGCCATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGCAACACCAAGGATGACTTAAGGCTCCCAACTGATGACAACCTGCTCTCTCAGGTAAAGGCACAATCAGATTCGATATTGCTTAATATTCTGTTCTTTAAGAGATTTTTGAAGATATGGCCATATGGGTTTAATCTTTATATTAAGGATGGTTTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG | 570 | 45.44 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQVKAQSDSILLNILFFKRFLKIWPYGFNLYIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1817752 | 1821181 | - | CmoCh09G004160.1 | Cmo09g00416 | 388418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00416 | 189 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo09g00416 | 189 | PIRSF | Transl_init_eIF5A | 1 | 148 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo09g00416 | 189 | PIRSF | Transl_init_eIF5A | 145 | 186 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo09g00416 | 189 | Gene3D | - | 86 | 138 | IPR012340 | - | |
Cmo09g00416 | 189 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 131 | IPR012340 | - | |
Cmo09g00416 | 189 | CDD | S1_eIF5A | 86 | 185 | - | - | |
Cmo09g00416 | 189 | SMART | eIF_5a_2 | 85 | 183 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo09g00416 | 189 | PANTHER | BNAA07G09420D PROTEIN | 156 | 185 | - | - | |
Cmo09g00416 | 189 | PANTHER | BNAA07G09420D PROTEIN | 1 | 123 | - | - | |
Cmo09g00416 | 189 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 124 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo09g00416 | 189 | Gene3D | - | 153 | 187 | IPR012340 | - | |
Cmo09g00416 | 189 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 156 | 183 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo09g00416 | 189 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 131 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo09g00416 | 189 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Cmo09g00416 | 189 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Cmo09g00416 | 189 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo09g00416 | 189 | SUPERFAMILY | Nucleic acid-binding proteins | 156 | 185 | IPR012340 | - | |
Cmo09g00416 | 189 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 156 | 185 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo09g00416 | 189 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 123 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00354 | Cmo09g00416 | CCT | |
Cmo01g01713 | Cmo09g00416 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00416 | Cmo-Chr9:1817752 | Cmo18g01144 | Cmo-Chr18:11697801 | 3.35E-105 | dispersed | |
Cmo01g01713 | Cmo-Chr1:12861126 | Cmo09g00416 | Cmo-Chr9:1817752 | 2.48E-112 | wgd | |
Cmo10g00501 | Cmo-Chr10:2234753 | Cmo09g00416 | Cmo-Chr9:1817752 | 1.09E-67 | wgd | |
Cmo11g00460 | Cmo-Chr11:2245677 | Cmo09g00416 | Cmo-Chr9:1817752 | 1.29E-105 | wgd | |
Cmo05g00354 | Cmo-Chr5:1586049 | Cmo09g00416 | Cmo-Chr9:1817752 | 3.95E-103 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00416 | K03263 | K02180 | fve:101296375 | 308.531 |