Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00417 ATGCGATCACTTCGGACGTCCTCGTTTTCTCCAGGCTTGATTAAGATCTTCAATAACTTCGTCGTTTCTGATAATGGAGAATTGGCGCTCAATCATTTCAAAGTGTTCATGATTTTTCAATTTGGAGCGCGGTTTTGTGCTCATTTGGATCTTAACCACAATATCACAATGGCCCTATTTCGCAAGTTCTTTTATCGGAAGCCACCGGACGGGCTGTTAGAGATATCCGAAAGGGTTTATGTTTTCGATAGCTGCTTTACGACGGAGGTATTGGAAGAGGATGAATACAAGGTCTATATTGGAGGCATTGTAGGAAAGCTTCGTGAGAGTCTCACCGACGCTTCGTTCATGGTGTTTAATTTTCGAGAAGGGGAGGGTCATAGCCTCATTACGAATATATTATCTGTATTTGATATGACCGTCATGGATTATCCGAGACAATATGAAGGCTGCCCTCTACTCACCATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAGCAAAATGTACTTTTGATGCATTGCGAAAGAGGGGGGTGGCCTGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAATACGCAGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCGCCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAACCCGTTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGGAGAAATGTGGGCTCGCAATGGCCTCCGCTCGACAGGGCGCTCACTCTAGACTGCATTATTATTAGATTGATTCCTAATATGGATGGGGAGGGTGGTTGTCGCCCAATATTCAGGATATATGGACAGGATCCCTTTTTGGTGGCGGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTTTAAGCAGGTAGATTGTGAACTACTTAAAATTGATATCCATTGCCATATACAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGTAAGGGAGGAGATGATGTTTCGGGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGACGACATTGATATCGTATGGCATGCAAACGATCAATTTCCAAAGGATTTCCGAGCAGAGATTCTTTTCTCAGAGATGGATGCTTCCGCATCACTTGTTTCAATTGAATTGCCAAATATTGAGGAGAAAGATGGCCTTCCGATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCACTGAGGACTGGCTAAGCCCAAAGGCTAATGCAGCTCTTAATATGCTCCAGAAAATAACAGCTACGAATTTTCTTACAGAGAAACTGGCTAGTTCCAGCCCTTTAGAGAGAACCGAGATGCTCGACTTATCTCTTGATAAACTAGCTATGGAATCAGAGACAATGGAAGACGATGTTATAAGTCCCCGATCGAAGATGGATACAAATCAATATCAGCCTTCTTTTGAACTATCCCACGCTGCAAGTTCAGCGAGATCAAAGATTGAACCCCCAGAATTGCAGGTTGCTCTCCAACTACCAGTTCAGTCTAAAATCATCACCCAACGAGTACCTGAACCTCCATTGTCGACGCCAGACTCCTTCCCTAGTTCTGTGCAAGGTTCACCTCGCGCAATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACATGATCATTCCACATTTAGTGGTAAAGAAGTCCTACAACCAACAATGTCTTCACCATCATCTGGTCTGTTGAGTATGCGTGCTCTAGATTCCCTGAAAGACATTCAACCTAGTAAGCTTCCTATTTTGCCAACTTCAACCATTACTGATCCGTTGACACTTCACCAACGTTCCTTGAAACCTCTAAAATTTTCACATCCTCAACCTCCTCAAACCGCTCCACGGGGGAGAAGTCAATTGTCACCTTCTTCATCTCAACCAACACCTACCTCTTTTCGTCGGGAGTCCCCACCCTCTTTCAATGAGAGTGAACCTTCAAGATCCTCTTCTAAGGAATCATTTTCTGTTCCCATTCATCCCTCACCTTCGGCTTTAGTAACATCTCTATGTACTAGTAGGACGAATGGTTCGTTTTCCCCACCCGCACCACAACCTCCTTCTACGACAGTACTGTTATCCTCTACGAAGAACTTGACGAGTGCCTCTACCCTTCCCTTCCCTCCTCCTCCTCCTCCTCCTCCATGTTGTACCCCTAACTTGGGTGCTAGTGTTGTCTCGCCAACATCAGTGCCCCAACCCCCACCTCCACCTCCTTCATTGAAGGACTCTATAATCACAGTCATGCATGATCCCCGATCTCCACCTCTCGCCCCACCCTTGCCTCCATCTTTTTTGAGTTCAACACCTACTTGTGATTCTACTATCACACCTCCTCCTAGTCTTGCACCACAAGATTCTGCCACGGTAGTTAGGAACTCAACGGTTGTACCTAGCGCTCCACCTCCCCCACCTCTCCCATCTCATTCTTCTTCAAGTCCTAGTACTATATCTTCAGTGCCACCCCCGCCACCCCCTCCTAGTCTTGCACCAAATGTCTCTGCCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGATCCACCTTATGTTCAGGTGCTGTAACGTCAGCTCCACCTGCTCCACCTCCTCCAGGTTTTTCAATGAAGGAGTCTGCAACACATGCTCCACCTGCACCCCCTCCCCCAGGTCTCAACGGTAATAAACTTTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCACTAACAACAGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGGTCTATTCAGTGCAAAGGCACGATGCATTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCTTATCACTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTGTGGGCAGAGACACAAAAAAGTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAAAATCTGGAGGTTTGGGTGGAAATTCAAATCGCCCAGCCTCAGGGCCGAAATCAGAGAAAGTTCAATTGATTGAACTTCGACGGGCATATAATTGCGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCCGATATGATGTGTTCAGTACTTGCATTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAGTGGGGATAAGGAGAACTTGGGAAAATGTGAACAGTTCTTTTTAGAATTGATGAAAGTCCCACGAGTAGAGTCGAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCATTTGCAGGCCTCTGACCTTAGAAATAATCTGAACACTATCAATTCGACATCTGATGAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCGTTGGGTAACGCTTTGAACCACGGAACGGCTAGAGGTTCGGCGATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCGAGGAACAACAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTTTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGCTTCTACAAAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTGGAGAAGGTCGTTCAGGAATTGGCTAATTCCGAGAACGACGGGCACGTTTCAGAAAATTTTTGTCAGACTTTAAAAAACTTCCTTTCTCATGCTGAGGCCGAAGTGAGGTCTCTTGCCTTTCTTTATTCTAATGTGGGTAGAAATGCTGATGCACTTGCTCTTTATTTCGGCGAAGATCCAGCACGTTGCCCTTTCGAGCAAGTTGTTTCTACACTGTTCAATTTCGTGAGGATGTTCGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGATTATGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGATAAGTTAAAGGTCAGTACCCCGAAAAAGGAGTCACGATTCTTCATGCAGACACCAACCTAG 4170 44.56 MRSLRTSSFSPGLIKIFNNFVVSDNGELALNHFKVFMIFQFGARFCAHLDLNHNITMALFRKFFYRKPPDGLLEISERVYVFDSCFTTEVLEEDEYKVYIGGIVGKLRESLTDASFMVFNFREGEGHSLITNILSVFDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSQWPPLDRALTLDCIIIRLIPNMDGEGGCRPIFRIYGQDPFLVADRTSKVLFSTPKKSKLVRQFKQVDCELLKIDIHCHIQGDVVLECISLDNDLVREEMMFRVMFNTAFIRSNILMLNRDDIDIVWHANDQFPKDFRAEILFSEMDASASLVSIELPNIEEKDGLPIEAFARVQEIFSTEDWLSPKANAALNMLQKITATNFLTEKLASSSPLERTEMLDLSLDKLAMESETMEDDVISPRSKMDTNQYQPSFELSHAASSARSKIEPPELQVALQLPVQSKIITQRVPEPPLSTPDSFPSSVQGSPRAILRYHSAPSALGITALLHDHSTFSGKEVLQPTMSSPSSGLLSMRALDSLKDIQPSKLPILPTSTITDPLTLHQRSLKPLKFSHPQPPQTAPRGRSQLSPSSSQPTPTSFRRESPPSFNESEPSRSSSKESFSVPIHPSPSALVTSLCTSRTNGSFSPPAPQPPSTTVLLSSTKNLTSASTLPFPPPPPPPPCCTPNLGASVVSPTSVPQPPPPPPSLKDSIITVMHDPRSPPLAPPLPPSFLSSTPTCDSTITPPPSLAPQDSATVVRNSTVVPSAPPPPPLPSHSSSSPSTISSVPPPPPPPSLAPNVSAPPPPPPPPFANSGSTLCSGAVTSAPPAPPPPGFSMKESATHAPPAPPPPGLNGNKLSNVNGTSSQSHVGTNNSNIPSIPGPPSSGLFSAKARCIGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKSDEASKAPEFDMSELESLFSAAAPNSKSGGLGGNSNRPASGPKSEKVQLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDESALDVDQVENLIKFCPTKEEMELLKGYSGDKENLGKCEQFFLELMKVPRVESKLRVFSFKIQFHLQASDLRNNLNTINSTSDEIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGHVSENFCQTLKNFLSHAEAEVRSLAFLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLDYEKKKAQKEAAEKDKLKVSTPKKESRFFMQTPT 1389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1825147 1835376 + CmoCh09G004170.1 Cmo09g00417 388419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 801 830 - -
Cmo09g00417 1389 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 70 243 IPR029021 -
Cmo09g00417 1389 Gene3D Formin, FH2 domain 962 1355 IPR042201 -
Cmo09g00417 1389 ProSiteProfiles Formin homology-2 (FH2) domain profile. 969 1370 IPR015425 -
Cmo09g00417 1389 Pfam C2 domain of PTEN tumour-suppressor protein 256 393 IPR014020 -
Cmo09g00417 1389 Gene3D - 252 397 - -
Cmo09g00417 1389 PANTHER FORMIN-J 806 1380 - -
Cmo09g00417 1389 PANTHER FORMIN-J 57 792 - -
Cmo09g00417 1389 SMART it6_source 968 1384 IPR015425 -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 1364 1389 - -
Cmo09g00417 1389 SUPERFAMILY Formin homology 2 domain (FH2 domain) 895 1364 - -
Cmo09g00417 1389 SMART PTEN_C2_2 253 393 IPR014020 -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 851 880 - -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 723 737 - -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 1024 1045 - -
Cmo09g00417 1389 ProSiteProfiles C2 tensin-type domain profile. 255 394 IPR014020 -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 646 713 - -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 738 753 - -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 1364 1378 - -
Cmo09g00417 1389 Coils Coil 1345 1365 - -
Cmo09g00417 1389 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 394 IPR035892 -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 922 950 - -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 1024 1043 - -
Cmo09g00417 1389 Gene3D Protein tyrosine phosphatase superfamily 48 247 IPR029021 -
Cmo09g00417 1389 Pfam Formin Homology 2 Domain 971 1344 IPR015425 -
Cmo09g00417 1389 MobiDBLite consensus disorder prediction 636 956 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01711 Cmo09g00417 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00417 Cmo-Chr9:1825147 Cmo10g00227 Cmo-Chr10:985213 1.66E-176 dispersed
Cmo01g01711 Cmo-Chr1:12844168 Cmo09g00417 Cmo-Chr9:1825147 0 wgd
Cmo10g00505 Cmo-Chr10:2257120 Cmo09g00417 Cmo-Chr9:1825147 0 wgd
Cmo11g00464 Cmo-Chr11:2265801 Cmo09g00417 Cmo-Chr9:1825147 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00417 - - csv:101214019 1877.06