Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00419 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCTAAGGTCTATTATGGAAAAGAATTGGAGTCTGGAGAAAGTGTAGCGATTAAGGTTTTAAACAAGGATCAGGTCAAGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGTCTTGTTCGTCATCCAAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAGCTTTTTGCCAAAGTTGCAAGAGGAAGACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGTGCCGTCGATTACTGTCATAGTCGTGGAGTTTCTCACCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTCTACCGGAACAGCTTCGGAACGATGGTCTTCTCCACACGCAGTGCGGGACTCCGGCCTACGTCGCACCGGAAGTACTAAGAAGAAAGGGCTACGATGGAGCCAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTCTGTTAGCAGGATTCCTTCCGTTTCAGGATGAGAACATCATGACTATGTATAAGAAGGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCTGAAGCGAAGCGTTTGATTTCAAAAATCCTCGTCGTAGATCCAGAAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGCAAAGATTTCTCAAGATCGCTCTCGTTCACGATGAAAGAATTAGTCACAGCGAAAACAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTCGAGTTCATATCGACGATGTCATCGGGATTCGATCTATCGAGCTTATTCGAAAACAAAAGGAAGACGGGATCCATTTTCACATCGAGATGCTCAGTGTCGACGATCATGGAGAAAATCGAGACGGTGGCGAAGAGACTGAGCTTCAAGGTCTCGGAAGTGAAAGACTTCAAGCTCCGGCTGCAAGGTCCGGGGGAGGGGCGAAAAGGAAAGCTATCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCCATAGTCGAATTTTCAAAGTCGGCCGGGGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGGCCGGCGTTGAAGGACATCGTTTGGACGTGGCAAGGTGATTGTGTCCCCACCGGTGACGGACGTCACGGCCAACTTGACGGCGACGGCTTTTTGTGA 1332 48.27 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGRLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAEAKRLISKILVVDPERRITIGAITRVPWFRKDFSRSLSFTMKELVTAKTEDSDSESPKLSTPKFFNAFEFISTMSSGFDLSSLFENKRKTGSIFTSRCSVSTIMEKIETVAKRLSFKVSEVKDFKLRLQGPGEGRKGKLSVTAEVFEIAPEVAIVEFSKSAGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPTGDGRHGQLDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1843227 1844558 - CmoCh09G004190.1 Cmo09g00419 388421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00419 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cmo09g00419 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00419 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cmo09g00419 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00419 443 PANTHER - 1 430 - -
Cmo09g00419 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 430 - -
Cmo09g00419 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cmo09g00419 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cmo09g00419 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Cmo09g00419 443 CDD CIPK_C 302 416 - -
Cmo09g00419 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00419 443 CDD STKc_SnRK3 10 264 - -
Cmo09g00419 443 Pfam NAF domain 298 355 IPR004041 GO:0007165
Cmo09g00419 443 SUPERFAMILY Protein kinase-like (PK-like) 7 290 IPR011009 -
Cmo09g00419 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00419 Cmo-Chr9:1843227 Cmo13g00625 Cmo-Chr13:6757756 4.87E-178 dispersed
Cmo11g01032 Cmo-Chr11:5652371 Cmo09g00419 Cmo-Chr9:1843227 2.47E-85 dispersed
Cmo14g01072 Cmo-Chr14:5903459 Cmo09g00419 Cmo-Chr9:1843227 0 transposed
Cmo10g00509 Cmo-Chr10:2286667 Cmo09g00419 Cmo-Chr9:1843227 0 wgd
Cmo11g00466 Cmo-Chr11:2282701 Cmo09g00419 Cmo-Chr9:1843227 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74560 PF00069 Pkinase 2.60E-75 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00419 - - csv:101213773 827.78