Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00426 ATGACGGTTGAGCCTAGAATCGATGATCCAAATGACCAATTTCCGATTGGAATGCGTGTTCTCGCCGTTGACGATGATCCTACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTGACTACAACTAATCAGGCTATTATGGCACTCAAGTTACTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGACCTGCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGCGATTACTTGTTGAAACCTGTTCGCATCGAGGAGCTAAGGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTCGATCCGAAGGACCGAATGAATTCTGGCAATCAGGACAAGGTTGATTCTGAGAATGGTGAAGAAGCAGCCGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAATGATGATGATGACCAGGACTATAATGAGCAAGAGAATGACGACGCGTCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAATTTGTCAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGATTTGATGAACGTCGAAAAGCTCACAAGAGAAAACGTAGCTAGTCATCTCCAGAAATACAGGCTTTATCTTAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGGAGATCCTTCTTATTTGAGAATCGGTTCTCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCGCAGTTTCCGAACACTGCTTATAGATCCATCCCAACGACTGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGTATGCACGGCCTTTCGTCCCCAGGAACAGTTAAACTGGGTAATATGAACAATTCAAACAATGATCAATCCACATTTCAGCCAATCATGCTTTCTGGAAACCGCAGTGGGAATATTTTCCAGGGAATTCCTGAGCCATCAGAACTTGATCAACTACAACATGTTAAGCACGGGACCCATGTGGACAATCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCCTCCATTGGCCTACCAAATGCAAACATGTCTTCTGGAACTTTGAGTAATCCTCTTTTAGGATTAGCTAATGATCCCATGATTTCAGAAGTTCAGCATCATGAAGTGAATGTTGGCAGAAAATTTGGATCTCAATCTTCGATTTCGGTACTATCTTCAACTTCCGAAAGCTCACGTCCTTCGCTCGATAATCTTAGATGCACTGGTGAGAATTGGCCGAAAGCTGTTCATTCATCTCGGGTCCACTTGAATTCAATTCCATCTAGCAACCTTTCGAATATTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCGTCTATTACTTCAATATCTACTCCGTCCCATGATTCGAGAAGAGATTCTCAACGACAAGGAGCCACAACTAGCAACAGATATAATCAAATGATCTCGAAGGTTCCTGTTCAAGATTGGAATGATCATAAACAGGATGCCTATTGCCACACAACTATGGCCTGTAGTTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAGCATTTGGAAAATCAGAACACCTTCTCTGGTAGCAAGGATTTCAATGTGACTAATCAAGCAATTGTTCTTGATCATGCAATGATGGAACATGATAGATTCAAGAAATCCACAATGGAGACGTCGCTCATGTTGAAACAAGGTTACCTGTACGATCATCAGCAAAAGATGCAACCCAGATTCTCTTCAAGTTTAGCTCCCTGA 1965 42.54 MTVEPRIDDPNDQFPIGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELRNIWQHVIRRKKFDPKDRMNSGNQDKVDSENGEEAADPNGKFNKKRKDQNYNDDDDQDYNEQENDDASTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSGDPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNTPACMGMHGLSSPGTVKLGNMNNSNNDQSTFQPIMLSGNRSGNIFQGIPEPSELDQLQHVKHGTHVDNLSSAFDERTVFPASIGLPNANMSSGTLSNPLLGLANDPMISEVQHHEVNVGRKFGSQSSISVLSSTSESSRPSLDNLRCTGENWPKAVHSSRVHLNSIPSSNLSNIATSYHSQLRDNTTSALHIGNCLSDISSITSISTPSHDSRRDSQRQGATTSNRYNQMISKVPVQDWNDHKQDAYCHTTMACSSSNSLIPVNGAAETLPKHLENQNTFSGSKDFNVTNQAIVLDHAMMEHDRFKKSTMETSLMLKQGYLYDHQQKMQPRFSSSLAP 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1898549 1902587 - CmoCh09G004260.1 Cmo09g00426 388428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00426 654 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cmo09g00426 654 MobiDBLite consensus disorder prediction 520 542 - -
Cmo09g00426 654 PIRSF RR_ARR_type-B 1 646 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmo09g00426 654 MobiDBLite consensus disorder prediction 141 197 - -
Cmo09g00426 654 Gene3D - 194 257 - -
Cmo09g00426 654 SMART REC_2 18 130 IPR001789 GO:0000160
Cmo09g00426 654 CDD REC_typeB_ARR-like 20 134 - -
Cmo09g00426 654 Gene3D - 17 153 - -
Cmo09g00426 654 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Cmo09g00426 654 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Cmo09g00426 654 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 628 IPR045279 GO:0009736
Cmo09g00426 654 SUPERFAMILY CheY-like 17 142 IPR011006 -
Cmo09g00426 654 MobiDBLite consensus disorder prediction 141 179 - -
Cmo09g00426 654 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cmo09g00426 654 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 628 - -
Cmo09g00426 654 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Cmo09g00426 654 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01548 Cmo-Chr6:10900168 Cmo09g00426 Cmo-Chr9:1898549 9.98E-105 dispersed
Cmo08g01225 Cmo-Chr8:7770459 Cmo09g00426 Cmo-Chr9:1898549 2.37E-104 dispersed
Cmo09g00426 Cmo-Chr9:1898549 Cmo14g01636 Cmo-Chr14:12981700 3.29E-107 dispersed
Cmo01g01702 Cmo-Chr1:12766984 Cmo09g00426 Cmo-Chr9:1898549 0 wgd
Cmo10g00516 Cmo-Chr10:2333938 Cmo09g00426 Cmo-Chr9:1898549 3.54E-140 wgd
Cmo11g00476 Cmo-Chr11:2328507 Cmo09g00426 Cmo-Chr9:1898549 2.22E-150 wgd
Cmo12g01197 Cmo-Chr12:10782304 Cmo09g00426 Cmo-Chr9:1898549 8.18E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10347 PF00072 Response_reg 6.20E-23 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00426 - K14491 csv:101215220 1112.06