Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00426 | ATGACGGTTGAGCCTAGAATCGATGATCCAAATGACCAATTTCCGATTGGAATGCGTGTTCTCGCCGTTGACGATGATCCTACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTGACTACAACTAATCAGGCTATTATGGCACTCAAGTTACTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGACCTGCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGCGATTACTTGTTGAAACCTGTTCGCATCGAGGAGCTAAGGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTCGATCCGAAGGACCGAATGAATTCTGGCAATCAGGACAAGGTTGATTCTGAGAATGGTGAAGAAGCAGCCGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAATGATGATGATGACCAGGACTATAATGAGCAAGAGAATGACGACGCGTCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAATTTGTCAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGATTTGATGAACGTCGAAAAGCTCACAAGAGAAAACGTAGCTAGTCATCTCCAGAAATACAGGCTTTATCTTAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGGAGATCCTTCTTATTTGAGAATCGGTTCTCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCGCAGTTTCCGAACACTGCTTATAGATCCATCCCAACGACTGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGTATGCACGGCCTTTCGTCCCCAGGAACAGTTAAACTGGGTAATATGAACAATTCAAACAATGATCAATCCACATTTCAGCCAATCATGCTTTCTGGAAACCGCAGTGGGAATATTTTCCAGGGAATTCCTGAGCCATCAGAACTTGATCAACTACAACATGTTAAGCACGGGACCCATGTGGACAATCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCCTCCATTGGCCTACCAAATGCAAACATGTCTTCTGGAACTTTGAGTAATCCTCTTTTAGGATTAGCTAATGATCCCATGATTTCAGAAGTTCAGCATCATGAAGTGAATGTTGGCAGAAAATTTGGATCTCAATCTTCGATTTCGGTACTATCTTCAACTTCCGAAAGCTCACGTCCTTCGCTCGATAATCTTAGATGCACTGGTGAGAATTGGCCGAAAGCTGTTCATTCATCTCGGGTCCACTTGAATTCAATTCCATCTAGCAACCTTTCGAATATTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCGTCTATTACTTCAATATCTACTCCGTCCCATGATTCGAGAAGAGATTCTCAACGACAAGGAGCCACAACTAGCAACAGATATAATCAAATGATCTCGAAGGTTCCTGTTCAAGATTGGAATGATCATAAACAGGATGCCTATTGCCACACAACTATGGCCTGTAGTTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAGCATTTGGAAAATCAGAACACCTTCTCTGGTAGCAAGGATTTCAATGTGACTAATCAAGCAATTGTTCTTGATCATGCAATGATGGAACATGATAGATTCAAGAAATCCACAATGGAGACGTCGCTCATGTTGAAACAAGGTTACCTGTACGATCATCAGCAAAAGATGCAACCCAGATTCTCTTCAAGTTTAGCTCCCTGA | 1965 | 42.54 | MTVEPRIDDPNDQFPIGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELRNIWQHVIRRKKFDPKDRMNSGNQDKVDSENGEEAADPNGKFNKKRKDQNYNDDDDQDYNEQENDDASTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSGDPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNTPACMGMHGLSSPGTVKLGNMNNSNNDQSTFQPIMLSGNRSGNIFQGIPEPSELDQLQHVKHGTHVDNLSSAFDERTVFPASIGLPNANMSSGTLSNPLLGLANDPMISEVQHHEVNVGRKFGSQSSISVLSSTSESSRPSLDNLRCTGENWPKAVHSSRVHLNSIPSSNLSNIATSYHSQLRDNTTSALHIGNCLSDISSITSISTPSHDSRRDSQRQGATTSNRYNQMISKVPVQDWNDHKQDAYCHTTMACSSSNSLIPVNGAAETLPKHLENQNTFSGSKDFNVTNQAIVLDHAMMEHDRFKKSTMETSLMLKQGYLYDHQQKMQPRFSSSLAP | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1898549 | 1902587 | - | CmoCh09G004260.1 | Cmo09g00426 | 388428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00426 | 654 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160 | |
Cmo09g00426 | 654 | MobiDBLite | consensus disorder prediction | 520 | 542 | - | - | |
Cmo09g00426 | 654 | PIRSF | RR_ARR_type-B | 1 | 646 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cmo09g00426 | 654 | MobiDBLite | consensus disorder prediction | 141 | 197 | - | - | |
Cmo09g00426 | 654 | Gene3D | - | 194 | 257 | - | - | |
Cmo09g00426 | 654 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160 | |
Cmo09g00426 | 654 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
Cmo09g00426 | 654 | Gene3D | - | 17 | 153 | - | - | |
Cmo09g00426 | 654 | Pfam | Response regulator receiver domain | 20 | 129 | IPR001789 | GO:0000160 | |
Cmo09g00426 | 654 | SUPERFAMILY | Homeodomain-like | 195 | 255 | IPR009057 | - | |
Cmo09g00426 | 654 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 628 | IPR045279 | GO:0009736 | |
Cmo09g00426 | 654 | SUPERFAMILY | CheY-like | 17 | 142 | IPR011006 | - | |
Cmo09g00426 | 654 | MobiDBLite | consensus disorder prediction | 141 | 179 | - | - | |
Cmo09g00426 | 654 | Pfam | Myb-like DNA-binding domain | 200 | 250 | IPR001005 | - | |
Cmo09g00426 | 654 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 628 | - | - | |
Cmo09g00426 | 654 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 198 | 251 | IPR006447 | GO:0003677 | |
Cmo09g00426 | 654 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 195 | 254 | IPR017930 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01548 | Cmo-Chr6:10900168 | Cmo09g00426 | Cmo-Chr9:1898549 | 9.98E-105 | dispersed | |
Cmo08g01225 | Cmo-Chr8:7770459 | Cmo09g00426 | Cmo-Chr9:1898549 | 2.37E-104 | dispersed | |
Cmo09g00426 | Cmo-Chr9:1898549 | Cmo14g01636 | Cmo-Chr14:12981700 | 3.29E-107 | dispersed | |
Cmo01g01702 | Cmo-Chr1:12766984 | Cmo09g00426 | Cmo-Chr9:1898549 | 0 | wgd | |
Cmo10g00516 | Cmo-Chr10:2333938 | Cmo09g00426 | Cmo-Chr9:1898549 | 3.54E-140 | wgd | |
Cmo11g00476 | Cmo-Chr11:2328507 | Cmo09g00426 | Cmo-Chr9:1898549 | 2.22E-150 | wgd | |
Cmo12g01197 | Cmo-Chr12:10782304 | Cmo09g00426 | Cmo-Chr9:1898549 | 8.18E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10347 | PF00072 | Response_reg | 6.20E-23 | CL0304 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00426 | - | K14491 | csv:101215220 | 1112.06 |