Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00429 ATGTTATGTGATTTCGATTTCAGAGAAGAAGAAGAAGAGGTGGATTTGGGGAAAATGTTCTGCAAAATTACTTTGATGTCGAAGAAGAAGAAGAGCGGAACCGTGCCGGTTTATTTGAATGTGTATGATTTAACGCCGATCAATGGCTATGCGTATTGGCTCGGACTTGGGGTTTACCATTCCGGCGTGCAAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAACGTGCAACTTCAGGGATATTTGAGGTAGAACCAAGACAATGTCCTGGTTTTACGTTTAGGAAATCAATTTGTATCGGAAGAACGAATCTAGATCAGAAAGATGTTCGCTCGTTTATGGAGAAAGTAGCCGAAGAGTACTCCGGGAACACTTATCATCTCATAACGAAAAATTGCAACCATTTTTGCAATGATGTATGCTTAAGGTTGGTAGGGAAACCAATTCCTAGCTGGGTTAACCGTCTTGCTCGACTTGGTCTTTTCTGCAACTGCGTTCTTCCAGCGAGTTTGCACGAAGCGAAGGTTCGGCAAGTACGCCCAGGAGATAAGCTCAACAACAATGGTGCAAAGAAGAAATTGAAAAGCCAACCAAGTAGGTATAATGATAAACCTTCTTCTGTTTCCAATCCTCCAACTTCAACCGTCAAAGTAAGTAAACAAAAACGATGTATCCCGCCATCATCAACGGTGATTCATTCTTCACCGTCCACAACCCAAGCTGTAAAGCTGTAA 738 42.28 MLCDFDFREEEEEVDLGKMFCKITLMSKKKKSGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHERATSGIFEVEPRQCPGFTFRKSICIGRTNLDQKDVRSFMEKVAEEYSGNTYHLITKNCNHFCNDVCLRLVGKPIPSWVNRLARLGLFCNCVLPASLHEAKVRQVRPGDKLNNNGAKKKLKSQPSRYNDKPSSVSNPPTSTVKVSKQKRCIPPSSTVIHSSPSTTQAVKL 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1917384 1919710 + CmoCh09G004290.1 Cmo09g00429 388431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00429 245 Gene3D PPPDE domains 30 185 IPR042266 -
Cmo09g00429 245 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 25 242 - -
Cmo09g00429 245 MobiDBLite consensus disorder prediction 179 245 - -
Cmo09g00429 245 ProSiteProfiles PPPDE domain profile. 35 172 IPR008580 GO:0008233
Cmo09g00429 245 MobiDBLite consensus disorder prediction 192 245 - -
Cmo09g00429 245 SMART DUF862_2a 35 173 IPR008580 GO:0008233
Cmo09g00429 245 Pfam PPPDE putative peptidase domain 36 170 IPR008580 GO:0008233
Cmo09g00429 245 PANTHER DESUMOYLATING ISOPEPTIDASE 25 242 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00429 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - csv:101215693 390.578
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01533 Cmo09g00429 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00586 Cmo-Chr8:3574648 Cmo09g00429 Cmo-Chr9:1917384 3.37E-83 dispersed
Cmo09g00429 Cmo-Chr9:1917384 Cmo14g01418 Cmo-Chr14:11573528 1.73E-79 dispersed
Cmo11g00560 Cmo-Chr11:2731794 Cmo09g00429 Cmo-Chr9:1917384 1.08E-64 dispersed
Cmo16g00110 Cmo-Chr16:503907 Cmo09g00429 Cmo-Chr9:1917384 4.70E-23 dispersed
Cmo18g01295 Cmo-Chr18:12464538 Cmo09g00429 Cmo-Chr9:1917384 1.45E-22 dispersed
Cmo01g01533 Cmo-Chr1:11834754 Cmo09g00429 Cmo-Chr9:1917384 2.14E-130 wgd
Cmo12g00310 Cmo-Chr12:1922683 Cmo09g00429 Cmo-Chr9:1917384 3.91E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00429 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0