Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00434 ATGGCGTATCACAATCACCTCTCACAGGACCTTCCCCTCCACTTTTCTGACCACCAACAACACCACCAAAATCAGCCTCTCTCTGATACCTCTCTGCGTACCATTCTGCCGGACCAGCTTGCCGGCGGTCACTCCTCGCCGGACCCCAAGTCCCACCATCATCATCACCATCATCCGCTGCAGACAGCGCCGAATTGGCTCAACAACGCACTGCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCGTCACCACAGCCGCCGCCGCCGCAGCCGCCAATACCAATTTCCTCAACCTTCACACCACTGCATCGGATTCCACCGTCTCTCACTCCTCAAACCAATGGCTCTCCCGTCCGATCCTCCACCGCAACCATAGCGATGTCATCGACGATGTCACCGCCTCCGCCGGTGATGCTATGATCGGTGCCGCTACCGCCGCGCTCTCTCACGATTCCGGTGAGATGAAGAACGACGCTAATAGCGGCGATGGAATGAACAAGAGCGAGGGTATGGTGATGGAACCTAGCGCCGGTGGAGAGGGGGTTTTGAATTGGCATAATGCTCGTTATAAAGCCGAGATTCTCACTCATCCTCTTTACGAGCAGCTTCTCTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCCGTCGATCAATTACCGAGGATCGACGCCCAGCTCGCTCAATCTCAGAATGTCGTCGCTAAATACTCCGCTTTAACCCACACCGCTCCACCGCCCATGGTTGGCGATGACAAAGAGCTCGATCAATTCATGACGCATTATGTTCTTTTGCTTTGTTCTTTCAAAGAACAGCTCCAACAACATGTTCGTGTCCATGCAATGGAAGCTGTAATGGCTTGCTGGGACATTGAGCAGTCCCTTCAAAGCTTAACAGGAGTTTCGCCCGGTGAAGGTACGGGAGCAACGATGTCGGACGACGAAGACGACCAAGTCGACAGCGATGCAAATTTATTTGATGGGAGTTTAGAGGGTCCAGACACTATGGGATTTGGCCCTCTTATTCCCACAGAAAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAGCTGAAGCATGAGCTAAAATCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCCGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACGGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAGCTGAAACAGATAAACAATTGGTTCATCAACCAAAGGAAGCGAAACTGGCACAACAATCCTTCAAGTTCTACCAACTTGAAAAGCAAACGCAAAAGGTATAATATAACATAA 1386 51.15 MAYHNHLSQDLPLHFSDHQQHHQNQPLSDTSLRTILPDQLAGGHSSPDPKSHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTVTTAAAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVTASAGDAMIGAATAALSHDSGEMKNDANSGDGMNKSEGMVMEPSAGGEGVLNWHNARYKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALTHTAPPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNNPSSSTNLKSKRKRYNIT 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1954115 1958547 + CmoCh09G004340.1 Cmo09g00434 388436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00434 461 MobiDBLite consensus disorder prediction 302 321 - -
Cmo09g00434 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 51 458 - -
Cmo09g00434 461 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 51 458 - -
Cmo09g00434 461 SMART KNOX2_2 248 303 IPR005541 GO:0003677|GO:0005634
Cmo09g00434 461 SMART KNOX1_2 191 235 IPR005540 GO:0003677|GO:0005634
Cmo09g00434 461 MobiDBLite consensus disorder prediction 437 461 - -
Cmo09g00434 461 ProSiteProfiles ELK domain profile. 360 380 IPR005539 GO:0003677
Cmo09g00434 461 Pfam KNOX1 domain 193 234 IPR005540 GO:0003677|GO:0005634
Cmo09g00434 461 SMART HOX_1 382 447 IPR001356 GO:0003677
Cmo09g00434 461 MobiDBLite consensus disorder prediction 37 62 - -
Cmo09g00434 461 CDD homeodomain 383 444 IPR001356 GO:0003677
Cmo09g00434 461 Pfam ELK domain 360 381 IPR005539 GO:0003677
Cmo09g00434 461 Pfam Homeobox KN domain 400 439 IPR008422 GO:0003677|GO:0006355
Cmo09g00434 461 ProSiteProfiles 'Homeobox' domain profile. 380 443 IPR001356 GO:0003677
Cmo09g00434 461 Gene3D - 381 443 - -
Cmo09g00434 461 Pfam KNOX2 domain 252 302 IPR005541 GO:0003677|GO:0005634
Cmo09g00434 461 SMART ELK_2 360 381 IPR005539 GO:0003677
Cmo09g00434 461 SUPERFAMILY Homeodomain-like 382 447 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01531 Cmo-Chr2:8896584 Cmo09g00434 Cmo-Chr9:1954115 1.81E-93 dispersed
Cmo09g00434 Cmo-Chr9:1954115 Cmo15g01252 Cmo-Chr15:8604183 3.48E-129 dispersed
Cmo01g01539 Cmo-Chr1:11883239 Cmo09g00434 Cmo-Chr9:1954115 0 wgd
Cmo12g00302 Cmo-Chr12:1887315 Cmo09g00434 Cmo-Chr9:1954115 0 wgd
Cmo05g00368 Cmo-Chr5:1662445 Cmo09g00434 Cmo-Chr9:1954115 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10349 PF03791 KNOX2 1.90E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00434 - - bhj:120085761 827.78