Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00449 ATGTCGTTCTTTTCTGGTATCTTCCTCGGCGTTGTTGTCGGAGTTTTACTGATTATCGCTCTTGCTCGCGTCGGGAATATACGCGCCAAGCATCGCTCCGATTTGGCTAAGACTATTGCAGCATTTGCAAGGATGACGGCACAGGATTCGAGAAAAATTCTCCCCAAGGAGTTTTATCCGTCGTGGGTTGTATTTACGCAGCGACAAAAGTTAAATTGGCTCAATCATCAGCTAGATAAAATCTGGCCATATGTTGACGAGGCAGCATCGGAGCTGATAAGGAGCAACGTGGAGCCGGTTCTCGAACAATTTCGACCGGCTGTACTATCTTCTTTGAAGTTCTCAAAGTTGACCCTTGGCACTGTCGCTCCACATTTTACAGGAATTGCTGTGCTTGAAGACGAGCTAGAACCTAATGGAATAACTTTGGAGTTGGAGATGCAGTGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATGTTGCATTCACAGGGCTTTTCAGATTAATATTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCATTGTGTTATTCTCTAAGGAAAAAGAAAAATCTTGATTTTAAGCTTAAGATTGTCGGTGGAGACATATCATCTATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATCCGAGATGCTATTGAAGGTACCATAACGTGGCCGGTTCGGATGATTGTGCCCATCATAGCAGGAGATTATAGCGACTTAGAGGTAAAGCCTGTTGGAACATTAGAAGTGAAGCTCGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCGGATCCTTATGCTGTGCTGTTTGTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCAATATGGAATGAGCACTTTGATTTCATTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAGTTTTTGATGACGAGGGAGTTCAGGCATCTGAACTTATTGGCTGCGCTCAAGTAGCATTGAAGGACCTCGAGCCTGGTAAAGTGAAGGATGTTTGGTTGAAGCTGCTCAAAGATTTGGACATCCAAAGAGATAACAAAAACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCTTTCGGCACTGATCAGGGCCGCCATAAAAACCCATTTAACCCAGATTATGCATTGACCTCAGTGGAGAAGGTTCTAAAGACGGCTCCAACTGGCTCAGAAGATGCAGGTTCTAGAAAACCAAGCTCCCCAAAGAAGAGGGATACGATTGTAAGAGGAGTGCTATCTGTGACAGTAATAGCTGCTGAAGATTTGCCTGCTGTAGATTACATGGGAAAAGCCGACCCTTATGTCGTACTGATTATGAAGAAATCCGAGACCAAGGTTAAAACGAGGGTTGTCCATGACACCCTGAATCCTGTCTGGAATCAAACGTTTGACTTTCTGGTGGAGGATGCATTACACGACATGCTAATGGTAGAGGTCTGGGATCATGACACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACACTGACAAGAGCGATATTGGAAGGGGAAATTCAGGACTGTTATCCACTGGAAGGAGCAAAATCAGGGCGGATTTATCTGAATCTCAAGTGGGCAGCTCAGCCACTCTTCCGAGACAATTGA 1710 43.51 MSFFSGIFLGVVVGVLLIIALARVGNIRAKHRSDLAKTIAAFARMTAQDSRKILPKEFYPSWVVFTQRQKLNWLNHQLDKIWPYVDEAASELIRSNVEPVLEQFRPAVLSSLKFSKLTLGTVAPHFTGIAVLEDELEPNGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDVAFTGLFRLIFKPLVDEFPCFGALCYSLRKKKNLDFKLKIVGGDISSIPGVSDAIEETIRDAIEGTITWPVRMIVPIIAGDYSDLEVKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFVRPLKERMKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRVFDDEGVQASELIGCAQVALKDLEPGKVKDVWLKLLKDLDIQRDNKNRGQVHLELLYYPFGTDQGRHKNPFNPDYALTSVEKVLKTAPTGSEDAGSRKPSSPKKRDTIVRGVLSVTVIAAEDLPAVDYMGKADPYVVLIMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDMLMVEVWDHDTFGKDKLGRVIMTLTRAILEGEIQDCYPLEGAKSGRIYLNLKWAAQPLFRDN 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2012461 2017835 + CmoCh09G004490.1 Cmo09g00449 388451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00449 569 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 251 IPR039010 -
Cmo09g00449 569 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
Cmo09g00449 569 CDD C2 266 368 - -
Cmo09g00449 569 ProSiteProfiles C2 domain profile. 426 544 IPR000008 -
Cmo09g00449 569 PRINTS C2 domain signature 509 517 IPR000008 -
Cmo09g00449 569 PRINTS C2 domain signature 461 473 IPR000008 -
Cmo09g00449 569 PRINTS C2 domain signature 487 500 IPR000008 -
Cmo09g00449 569 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Cmo09g00449 569 Gene3D C2 domain 256 392 IPR035892 -
Cmo09g00449 569 Gene3D C2 domain 431 562 IPR035892 -
Cmo09g00449 569 SMART C2_3c 265 365 IPR000008 -
Cmo09g00449 569 SMART C2_3c 445 543 IPR000008 -
Cmo09g00449 569 CDD C2 446 546 - -
Cmo09g00449 569 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 568 IPR045050 GO:0008289
Cmo09g00449 569 Pfam C2 domain 444 545 IPR000008 -
Cmo09g00449 569 Pfam C2 domain 264 368 IPR000008 -
Cmo09g00449 569 PANTHER SYNAPTOTAGMIN-4 1 568 - -
Cmo09g00449 569 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 443 560 IPR035892 -
Cmo09g00449 569 ProSiteProfiles C2 domain profile. 245 366 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00449 - - - csv:101210249 1038.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01569 Cmo09g00449 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01336 Cmo-Chr1:10585960 Cmo09g00449 Cmo-Chr9:2012461 4.14E-07 dispersed
Cmo05g01293 Cmo-Chr5:10011132 Cmo09g00449 Cmo-Chr9:2012461 0 dispersed
Cmo08g00915 Cmo-Chr8:5965873 Cmo09g00449 Cmo-Chr9:2012461 4.34E-11 dispersed
Cmo09g00449 Cmo-Chr9:2012461 Cmo17g00024 Cmo-Chr17:116622 8.12E-11 dispersed
Cmo09g00683 Cmo-Chr9:3387638 Cmo09g00449 Cmo-Chr9:2012461 6.22E-14 dispersed
Cmo11g00278 Cmo-Chr11:1355854 Cmo09g00449 Cmo-Chr9:2012461 4.62E-08 dispersed
Cmo20g00751 Cmo-Chr20:3765811 Cmo09g00449 Cmo-Chr9:2012461 3.03E-08 dispersed
Cmo01g01569 Cmo-Chr1:12061086 Cmo09g00449 Cmo-Chr9:2012461 0 wgd
Cmo12g01213 Cmo-Chr12:10843887 Cmo09g00449 Cmo-Chr9:2012461 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00449 Cmo_Chr09 FPKM 14.734784 14.087815 15.714095 14.611059 9.645864 9.86841 10.080823 16.076185 15.410169 15.00851