Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00460 ATGGCGGTCGACGGATTTGGCAAACTCGACGCTGCCCACTCTCCGCCGCCAATGACGACCGTCGAGAAGAATCGGAGATCGCCCTCGCTGCTTTCGTCTCCTTTGATGATTGTTGGTCTCTCGAAGAAGAACGTTTTGTATCGCCAGCTTCCGCATCAGCCTCTCATGCTCTCCGTCCTTAAATTAGATGGCTCTTGTTTCGATATTCAAGTTAAGAGATCAGCCACTGTTGCTGAATTAAAGGGGGCAGTGGAGTCGGTCTTCAGTCACATGCCACAGAATGGACCAGGAAAGATTTCATGGCTCCATGTGTGGTGGTATTTCTGCTTATGCTATGCTGGTCAGAAGTTAGTTGATGATACAGACTACATTGCAAATTTTGGCATCAAGGATGGTGATCAGCTTCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATGAGAAAGCAATCAAAGAAATGGGTGGTTTCCTCAAAACTGCTCAGTCGGATATCATCTCGGTCAAAAAGCTACAAGCAAAATGATAAGGAAGATATGGAAAGATACTACAACGATGCAGAGAGTGGAAGGTTTCAACATCATGGCAACAATGAGCCAAAGGTGGTACTCTTTTTGGGAGGGTGGTTCTCTCACACCAAGCAGGCATCTACAGGAAAGAGGAGCATCAATAGCCTGGCTCGTCCATCAGGTTCTCGCCCTAGCCTGGTGCGTGGTTTTAAGAATTTAATACAATTATGCCGTGAGAAACGACATTATGAGAAAGTGAATAAAAATAAGAGATCCATCAATAGGAGTCTGAGTAGAAGATTAGAAATGACTGATACACACACAAGACAACTAGATTGA 849 44.88 MAVDGFGKLDAAHSPPPMTTVEKNRRSPSLLSSPLMIVGLSKKNVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPQNGPGKISWLHVWWYFCLCYAGQKLVDDTDYIANFGIKDGDQLQFVRHVTTGYNVMRKQSKKWVVSSKLLSRISSRSKSYKQNDKEDMERYYNDAESGRFQHHGNNEPKVVLFLGGWFSHTKQASTGKRSINSLARPSGSRPSLVRGFKNLIQLCREKRHYEKVNKNKRSINRSLSRRLEMTDTHTRQLD 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2060941 2064870 - CmoCh09G004600.1 Cmo09g00460 388462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00460 282 SUPERFAMILY Ubiquitin-like 51 145 IPR029071 -
Cmo09g00460 282 Gene3D - 51 147 - -
Cmo09g00460 282 Pfam Ubiquitin-like domain 57 141 IPR040610 -
Cmo09g00460 282 MobiDBLite consensus disorder prediction 1 27 - -
Cmo09g00460 282 ProSiteProfiles Ubiquitin domain profile. 55 144 IPR000626 GO:0005515
Cmo09g00460 282 MobiDBLite consensus disorder prediction 259 282 - -
Cmo09g00460 282 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 17 257 IPR039690 GO:0000398|GO:0005689
Cmo09g00460 282 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 17 257 - -
Cmo09g00460 282 CDD Ubl_SNRNP25 55 140 IPR040610 -
Cmo09g00460 282 MobiDBLite consensus disorder prediction 257 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00460 - - - cmos:111442589 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00161 Cmo-Chr1:698293 Cmo09g00460 Cmo-Chr9:2060941 1.42E-32 dispersed
Cmo09g00079 Cmo-Chr9:368664 Cmo09g00460 Cmo-Chr9:2060941 1.17E-14 transposed
Cmo10g00568 Cmo-Chr10:2581263 Cmo09g00460 Cmo-Chr9:2060941 2.58E-07 wgd
Cmo11g00527 Cmo-Chr11:2573078 Cmo09g00460 Cmo-Chr9:2060941 9.20E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g493 . . . . . . . . . . Cma01g01506 . Car09g00397 . . . Cpe06g00334 . . . . . . . Cla05g01733 Cam05g1846 Cec05g1858 Cco05g1918 Clacu05g1834 Cmu05g1717 Cre05g1848 Cone4ag1781 . . . . Csa03g04329 Chy04g00372 . . . . . . . . . Sed13g2019 . Cmo09g00460 . . . . . Cpe02g00448 Bhi09g02232 Tan01g3635 Cmetu04g2649 . Hepe01g2015 Mch11g0551 . . . . . . . . . . . Cme04g00414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013027 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00460 Cmo_Chr09 FPKM 38.344566 40.699692 41.324074 46.311157 21.889982 20.54031 22.846941 47.384041 44.192223 55.449348