Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00466 ATGGCGCCTAGTACGATCCGGAAGGCGATCGGAGCGGTGAAGGATCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATACGGCGCCGGACCTTGAGGTGGCGATCGTGAAGGCCACTAGCCATGACGATGATCCGGCCAGTGAGAAGTACATCCGGGAGATTTTGAGCCTGACATCGTATTCTCGTGGCTACGTGAGTGCGTGTGTGGTGGCGGTTTCGAAGCGTCTGGCCAAGACGAGGGATTGGATCGTGGCGCTCAAGGCACTCATACTTGTGCATAGGTTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCCACTAGAAGGGGTACGAGGCTGTTGAATATGTCTGACTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTATTCGAACTTATGCATTTTACTTGGATCAACGGTTGGAATTGGTGTTGTTTGAAAAGAAAGGTAGTAGTGCAAAGGGAAATTCCCGTGGGGATGATAGGTTTGATGGAAGAGATGACTTTAGATCTCCGCCCCCGAGGCCCTATGATAATGGTTATGGTGAGTATAGGGGCGAGAGAGAGTATGGAAACTATGGTGGGATGAGGAGGTCGAGATCTTTCGGTGATGTGGGGGAATCAATGGAGAGGGAGGGGCAGGGGCGTAACAAGGGGCCTGTGACCCCATTGAGGGAAATGCCGATCGAGAGAATTTTCGGAAAGATGGGACATTTGCAGAGATTATTGGACAGATTCTTGTCATGTCGACCGACGGGATTGGCAAAGAATAGTAGGATGATTTTGTATGCTTTGTATCCTCTAGTGAGGGAGAGTTTTCAGTTGTATGCAGATATTTGCGAGGTTTTGGCTGTTTTGCTTGACAAATTCTTTGATATGGAGTATTCTGACAGTATGAAGGCATTTGATGCATATGGTAGTGCAGCCAAGCAGATTGATGAGCTAATTGCATTCTATAATTGGTGTAAAGACACAGGAGTTGCTAGATCCTCTGAGTATCCAGAGGTGCAGAGAATTACCAGCAAGTTACTGGAGACATTGGAGGAATTTCTGAGGGAAAGAGGGAAGGCGCCAAAGAGCCCCGAGAGGGAGCCACCTCCGCCCGCTCCTCAAGAGGAAGAACCAGTGCCTGATATGAATGAAATAAAGGCTCTTCCTCCACCTGAAAATTATACTCCACCTCCGCCCGAACCGGAGCCCCAGCCTGCACCTATACCTCAACCACAAGTCACGGAAGACTTGGTGAATCTGAGAGATGATGCAGTTAGTGCAGATGCTCAAGGTAACAAGCTGGCACTGGCTCTGTTTGCTGGCCCAGCAGCTAATGGCGCAAATGGATCCTGGGAAGCTTTCCCTTCTGATGGACAGCCAGAAGTAACCTCTGCCTGGCAGACCCCGGCTGCTGAACCTGGCAAAGCCGATTGGGAGTTGGCTTTGGTTGAGACAGCCAGCAATTTATCGAGGCAGAAGGCAGCGCTTGGCGGTGGACTCGACCCATTGTTGCTAAATGGCATGTATGATCAAGGAATGGTCAGGCAGCACACTAACACTGCACAGCTAAGCGGTGGAAGCGCTAGCAGTGTAGCATTGCCCGGCCCCGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCCGATGGAACCGTCCAGGCGGTGAACCAGGATCCATTCGCTGCATCATTAAGCGTTCCACCACCATCATACGTGCAAATGGTCGAGATGGAGAAAAAACAGCATATGCTGGTGCAGGAACAGCAGTTATGGCAGCAGTATGCAAGAGATGGGATGCAGGGGCAGAGCAGTTTGAACAAAATGAGTAACCCCCCAGGTTACTACAACATGGCAGCCGGACCAATGGCCCCGATGCCCTACGGGATGCCTCCGATGAACGGCAGCGGGTATTACTACATTCCTCAATGA 1950 50.72 MAPSTIRKAIGAVKDQTSIGIAKVASNTAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVVAVSKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFIRTYAFYLDQRLELVLFEKKGSSAKGNSRGDDRFDGRDDFRSPPPRPYDNGYGEYRGEREYGNYGGMRRSRSFGDVGESMEREGQGRNKGPVTPLREMPIERIFGKMGHLQRLLDRFLSCRPTGLAKNSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDSMKAFDAYGSAAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKAPKSPEREPPPPAPQEEEPVPDMNEIKALPPPENYTPPPPEPEPQPAPIPQPQVTEDLVNLRDDAVSADAQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTNTAQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHMLVQEQQLWQQYARDGMQGQSSLNKMSNPPGYYNMAAGPMAPMPYGMPPMNGSGYYYIPQ 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2085894 2087843 + CmoCh09G004660.1 Cmo09g00466 388468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00466 649 MobiDBLite consensus disorder prediction 160 193 - -
Cmo09g00466 649 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Cmo09g00466 649 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 627 IPR045192 GO:0048268|GO:0072583
Cmo09g00466 649 Gene3D ANTH domain 225 369 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cmo09g00466 649 Pfam ANTH domain 31 362 IPR011417 GO:0005543
Cmo09g00466 649 Gene3D - 2 155 IPR008942 -
Cmo09g00466 649 MobiDBLite consensus disorder prediction 396 416 - -
Cmo09g00466 649 SMART enth_2 30 160 IPR013809 -
Cmo09g00466 649 MobiDBLite consensus disorder prediction 361 378 - -
Cmo09g00466 649 MobiDBLite consensus disorder prediction 160 182 - -
Cmo09g00466 649 PANTHER - 5 627 - -
Cmo09g00466 649 CDD ANTH_N_AP180_plant 32 152 - -
Cmo09g00466 649 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Cmo09g00466 649 MobiDBLite consensus disorder prediction 361 417 - -
Cmo09g00466 649 SUPERFAMILY GAT-like domain 232 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00466 - - - csv:101207892 1085.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00463 Cmo-Chr9:2077913 Cmo09g00466 Cmo-Chr9:2085894 0 dispersed
Cmo09g00466 Cmo-Chr9:2085894 Cmo11g00531 Cmo-Chr11:2585962 0 dispersed
Cmo09g00464 Cmo-Chr9:2080680 Cmo09g00466 Cmo-Chr9:2085894 2.03E-16 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00466 Cmo_Chr09 FPKM 5.11831 5.355485 13.004653 13.957581 12.489648 12.498424 12.638996 12.993855 10.8816 11.4086