Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00470 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGCAGAAGCCAGCCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCCCTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCCACCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATACCATCCCCGTTGCCATCGCCCGAATCAACGAGCCAGGAACCCGATGGCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA 573 52.53 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEELLNWNCPLPSISS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2110532 2112508 + CmoCh09G004700.1 Cmo09g00470 388472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00470 190 MobiDBLite consensus disorder prediction 60 76 - -
Cmo09g00470 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cmo09g00470 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cmo09g00470 190 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cmo09g00470 190 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Cmo09g00470 190 MobiDBLite consensus disorder prediction 60 84 - -
Cmo09g00470 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 188 - -
Cmo09g00470 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Cmo09g00470 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cmo09g00470 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 188 - -
Cmo09g00470 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cmo09g00470 190 MobiDBLite consensus disorder prediction 140 163 - -
Cmo09g00470 190 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01535 Cmo09g00470 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00470 Cmo-Chr9:2110532 Cmo12g00308 Cmo-Chr12:1914204 3.16E-30 dispersed
Cmo01g01559 Cmo-Chr1:11988840 Cmo09g00470 Cmo-Chr9:2110532 9.15E-126 wgd
Cmo11g00545 Cmo-Chr11:2650406 Cmo09g00470 Cmo-Chr9:2110532 6.18E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10351 PF00847 AP2 3.80E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00470 - - cmax:111476664 377.867