Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00475 ATGGAAGCAAATGCGGGCCTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATATGAACAGCCAAACATGTCAAATATGTTGTGACACAGTTGGTCTTACGGCCTCTGGTGACGTCTTTGTTGCTTGCAATGAATGTGCGTTTCCCGTTTGTCGTCCGTGTTACGAGTATGAGAGAAAAGACGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGTGTCGATGGTGATGATGATGAAGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAAACAAAACGACATTGGCAAGGGGAAGATGCTGAACTATCGACCTCTGCGAGACATGAATCTCAACAGCCCATACCACTCCTTACCAATGGCCAATCAGTTTCGGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCGGTGCGAACCACATCTGGTCCTCTGGGTCCTCCAGAAAAGCATATGCACTCACATCCATATGTCGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATCTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGACAAAAACATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTACAAATGGCCGATGATGCTAGACAACCTCTGAGTCGTGTCGTTCCTATTCCATCTTCTCACTTGACCCCGTATCGTGTTGTGATCATACTCCGACTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACTCACCCTGTGAAGGATGCTTACCCCTTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTACCTTGAGAGACTCGCGCTAAGATACGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTTAGTACAGTGGATCCACTCAAAGAGCCTCCACTTATCACAGCAAACACTGTGCTTTCCATACTTTCTGTGGACTACCCAGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAATCCCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGTTCAATATTGAGCCAAGGGCCCCTGAGTTTTATTTTGCCCAAAAAATTGACTATTTAAAAGACAAGATTCAACCTTCCTTTGTCAAAGAGCGACGATCAATGAAAAGAGAGTATGAAGAATTCAAGGTTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAAAAACGACCAGGCTTCCAGCACCACAAGAAAGCAGGAGCCATGAATGCACTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAGGCTCTCAAGGAAGCCATGTGTTTCATGATGGATCCTGCGTATGGGAAGAAAACGTGTTATGTACAATTCCCACAACGTTTCGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTCGACATAAACTTGAAGGGGTTAGATGGCCTCCAGGGTCCGGTCTATGTGGGAACGGGTTGTTGTTTCAATCGACAAGCTTTATATGGTTATGATCCGGTTCTGACCGAGGCAGATTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATAGACAAAAAGAGAGCTGCAAAGAGGACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATCGAGGAAGGCGTTGAAGGTTATGATGATGAGAGGTCGCTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTCATTGCTGCCACTTTCATGGAAATGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTCATCAGTTGTGGGTATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCACGCTCGTGGGTGGATATCGATTTACTGCATGCCTCCACGCCCGGCGTTCAAGGGATCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCATTGGGTTCCATAGAAATCTTGCTCAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTAAAGCTTTTGGAGAGAATAGCATACATCAATACCATCGTTTACCCTATCACCTCAATTCCACTGATTGCATACTGTATGCTTCCTGCATTTTGTCTTTTGACTGGAAAGTTCATCATTCCTGAGATTAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGTATTCTCGAACTCAGATGGAGTGGGGTTAGCATCGAAGACTGGTGGAGGAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACGAACTTCACTGTGACGTCAAAGGCCAACGATGAAGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCCACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCAGGTGTTTCGTATGCCATTAACAGTGGCTACCAGTCTTGGGGCCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTAGGAAGGCAAAACCGTACACCTACCATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCCTTGCTCTGGGTGCGAATCGATCCATTCACCTCGGCTGCGACCAAGGCTGCCAATGGTCAATGTGGTGTCAATTGCTAG 3249 45.37 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNMNSQTCQICCDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKTKRHWQGEDAELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETYLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILSVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKFNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRSMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEMGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSAATKAANGQCGVNC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2136134 2141936 - CmoCh09G004750.1 Cmo09g00475 388477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00475 1082 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cmo09g00475 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1082 - -
Cmo09g00475 1082 SUPERFAMILY RING/U-box 22 111 - -
Cmo09g00475 1082 MobiDBLite consensus disorder prediction 161 193 - -
Cmo09g00475 1082 PANTHER CELLULOSE SYNTHASE 19 1082 - -
Cmo09g00475 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
Cmo09g00475 1082 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Cmo09g00475 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Cmo09g00475 1082 Coils Coil 456 476 - -
Cmo09g00475 1082 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo09g00475 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cmo09g00475 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cmo09g00475 1082 MobiDBLite consensus disorder prediction 74 142 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01553 Cmo09g00475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01364 Cmo-Chr7:7723464 Cmo09g00475 Cmo-Chr9:2136134 0 dispersed
Cmo08g00518 Cmo-Chr8:3241989 Cmo09g00475 Cmo-Chr9:2136134 0 dispersed
Cmo09g00475 Cmo-Chr9:2136134 Cmo10g00491 Cmo-Chr10:2193786 0 dispersed
Cmo01g01553 Cmo-Chr1:11951151 Cmo09g00475 Cmo-Chr9:2136134 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00475 K10999 - csv:101205724 2184.84