Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00477 ATGGCTCTTTCAGCGCCGGTGAAGGCACCGGAAGCACTTCTAGGCTCGCCGTCGATTTCTGGTAGGGTTAGCTTCTTCTTTCGCCGGCAGTTTCCATCCAACCTTAGTCTACTGCGTCTTCCTCCGGTTCGTCACACTCTATCGATTACATTTGCTCGCCGTCGGAACCAGAATTCATCAGTCGGTCCGTCTTCATCGTCTTCGAAGAAAAAGAAGAGAAATTCTTTTCCGAAAAAAACTAGGGATGAGGCGGATGAAGAAGAGGATGCTCTTGAGTTGTTGTTTAGTCAACTAGAAGAAGATCTAAAAAATGATAAGCTTACCCTGGATGATGATGATGATGATGGCGAAGAGGATGAACTTAGCGAAGAGGACCTTGCCAAACTAGAGCGCGAGTTAGGGTTAGCACTTGGCATCGATATTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAACGAAGAAGAAGAAGCAGAAGAAGATCTCGTGGATACCGAAGAAGAGGAAATGCCCGTAAAACTCAAGAACTGGCAACTTCGACGACTAGCCATGGCTTTGAAGAAAGGTCGCCGTAAAACTAGCATCAAGAGTCTTGCTGCTGAGCTTTGTCTTGATAGGGCCATCGTTCTTGACTTGCTTCGCGAACCACCGCCTCGTCTTCTGATGTTGAGTGCTTCTCTACCAGACCCACCCACACCATCAAATCCAGAAACTAGAACATTACAAGCTACTCGTGAAGAAGAAGAAGAAGAACCCGTAGAAGTAGATACTGCAGAAGAGGCAGAAGAGGTGAAGGTGCCTGTTCATGTCATGCAACAGAGCTGGGCTGCTCAAAAGAGGCTGAAAAAGGTTCAGGTTGGAACTCTTGAGAGAGTGTATAGAAGAACAAAGCGACCCACTAACGCAATGATTAGTAGCATTGTCCAAGTGACAAATCTGCCTCGCAAAAGAATAGTGAAATGGTTCGAAGATAAGCGAGGTGAAGACGGGGTTCCTGATCAACGCCTGCCTTATGATCGATCTGCTCCTAAATCTGCCTGA 1041 46.3 MALSAPVKAPEALLGSPSISGRVSFFFRRQFPSNLSLLRLPPVRHTLSITFARRRNQNSSVGPSSSSSKKKKRNSFPKKTRDEADEEEDALELLFSQLEEDLKNDKLTLDDDDDDGEEDELSEEDLAKLERELGLALGIDIDEEEEEEEEEENEEEEAEEDLVDTEEEEMPVKLKNWQLRRLAMALKKGRRKTSIKSLAAELCLDRAIVLDLLREPPPRLLMLSASLPDPPTPSNPETRTLQATREEEEEEPVEVDTAEEAEEVKVPVHVMQQSWAAQKRLKKVQVGTLERVYRRTKRPTNAMISSIVQVTNLPRKRIVKWFEDKRGEDGVPDQRLPYDRSAPKSA 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2159059 2161886 - CmoCh09G004770.1 Cmo09g00477 388479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00477 346 Coils Coil 81 101 - -
Cmo09g00477 346 Gene3D - 274 329 - -
Cmo09g00477 346 MobiDBLite consensus disorder prediction 104 169 - -
Cmo09g00477 346 MobiDBLite consensus disorder prediction 225 258 - -
Cmo09g00477 346 ProSiteProfiles 'Homeobox' domain profile. 272 326 IPR001356 GO:0003677
Cmo09g00477 346 MobiDBLite consensus disorder prediction 139 167 - -
Cmo09g00477 346 SMART HOX_1 278 336 IPR001356 GO:0003677
Cmo09g00477 346 Coils Coil 139 169 - -
Cmo09g00477 346 MobiDBLite consensus disorder prediction 54 70 - -
Cmo09g00477 346 MobiDBLite consensus disorder prediction 326 346 - -
Cmo09g00477 346 CDD homeodomain 278 326 IPR001356 GO:0003677
Cmo09g00477 346 PANTHER HOMEOBOX PROTEIN 8 40 341 - -
Cmo09g00477 346 Pfam Homeodomain 280 326 IPR001356 GO:0003677
Cmo09g00477 346 MobiDBLite consensus disorder prediction 106 125 - -
Cmo09g00477 346 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 40 341 - -
Cmo09g00477 346 SUPERFAMILY Homeodomain-like 276 331 IPR009057 -
Cmo09g00477 346 MobiDBLite consensus disorder prediction 54 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00477 - - - cpep:111796839 476.478
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g456 Blo01g01378 . Bda01g00735 . . Bpe02g00571 . . . . . . Car09g00413 . . . Cpe06g00349 . . . . . . . Cla05g01751 Cam05g1864 Cec05g1876 Cco05g1940 Clacu05g1855 Cmu05g1736 Cre05g1868 Cone4ag1803 Cone7ag1711 . . Lsi04g02145 Csa03g04348 Chy04g00354 . . . . . . . . . . . Cmo09g00477 Cma09g00470 . . . . . Bhi09g02268 . . . . Mch11g0572 . . . . . . . . . . . Cme04g00393
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009857 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 3 1 1 0 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10352 PF00046 Homeodomain 8.70E-06 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00477 Cmo_Chr09 FPKM 1.223945 1.674654 0.561302 0.0 2.968962 1.940502 3.272357 0.0 0.0 0.0