Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00478 ATGGCGTCCTTCTTGCAGTCGTTCATCGACCCAAAGAAGAACTGGTTCGCTCGTCAACACATGAAAGCGCTCACCCAACGCCTCCGTAATTATGGTCTTCGATACGACGATCTGTATGATCCGTACTACGATATTGATGTGAAGGAGGCTTTGAATCGGCTCCCGAGGGAGATTGTTGATGCGCGCAATCAGCGTCTGAAGCGGGCCATGGACCTTTCCATGAAGCATAAGTACCTTCCTGATGATCTCCAGGCCATGCAAACACCATTCAGGAGCTATCTCCAGGAAATGCTGGCACTTGTAAAGAAGGAGAGAGCAGAACGTGAGGCATTGGGAGCATTGCCTGTTTACCAGCGCACCATTCCTTAA 369 50.14 MASFLQSFIDPKKNWFARQHMKALTQRLRNYGLRYDDLYDPYYDIDVKEALNRLPREIVDARNQRLKRAMDLSMKHKYLPDDLQAMQTPFRSYLQEMLALVKKERAEREALGALPVYQRTIP 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2162857 2164918 - CmoCh09G004780.1 Cmo09g00478 388480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00478 122 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 7 1 122 - -
Cmo09g00478 122 Pfam Ubiquinol-cytochrome C reductase complex 14kD subunit 4 109 IPR003197 GO:0005750|GO:0006122
Cmo09g00478 122 SUPERFAMILY 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 3 117 IPR036544 GO:0005750|GO:0006122
Cmo09g00478 122 PIRSF Bc1_14K 1 118 IPR003197 GO:0005750|GO:0006122
Cmo09g00478 122 Gene3D - 2 112 IPR036544 GO:0005750|GO:0006122
Cmo09g00478 122 PANTHER UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN 1 122 IPR003197 GO:0005750|GO:0006122
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00478 K00417 QCR7, UQCRB; ubiquinol-cytochrome c reductase subunit 7 - csv:101205487 218.009
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01547 Cmo09g00478 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01547 Cmo-Chr1:11922621 Cmo09g00478 Cmo-Chr9:2162857 7.61E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g437 . . . . Bpe02g01236 . . . . . Cma01g01493 . Car09g00414 . . . Cpe06g00350 . . . . . . . Cla05g01753 Cam05g1868 Cec05g1879 Cco05g1943 Clacu05g1859 Cmu05g1740 Cre05g1870 Cone4ag1812 Cone7ag1722 Cone17ag1038 Cone20ag0660 Lsi04g02147 Csa03g04351 Chy04g00351 . . Blo18g00036 . Bda13g01270 Bpe14g00573 . Bma01g01287 Bma02g00031 Sed05g1682 Cmo01g01547 Cmo09g00478 Cma09g00472 . . . . Cpe02g00463 Bhi09g02272 Tan01g3669 Cmetu04g2507 . Hepe01g2040 Mch11g0575 . . . . . . . . . . . Cme04g00390
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005112 1 2 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00478 Cmo_Chr09 FPKM 9.748148 12.060013 14.513854 14.908237 10.001375 7.775644 9.845627 8.813779 5.591215 9.949181