Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00479 ATGTGCGGCAGAGAGGATCAACGAGAGCTTGAGCACTTATCGAGAGACGACGGCAGCCAATACAGCCTCACGGGTGGAATCCTGCCGCCGCTTGGCGTGAATGGGCGAAATAATCGAAGAAGCAAACTCGGTCCTCATATAATCTCGCCGTTCGATTACAATTACAGATTTTGGGAGACGTTTCTGATTTTCTTGGTACTCTACACAGCCTGGGCATGTCCGTTTGAGTTCGGGTTTCTCCCTTCGCCCAGCGGAGTTCTGGCAATAATTGACAATATCGTAAATGGACTTTTCGCCATTGATATAGTTCTGACATTCTTCGTGGCGTATTTGGACAAAACGACTTACCTGCTGGTGGATGACCGGAAGCTGATTGCTCTACGGTATGCCAAAACCTGGTTGGTCCTCGACGTTGTGTCCAATATTCCGTCGGAGATGGCTCGCAATATTCTCCCTCCTTCCCTTCAGGTTTATGGCTACTTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGCTCCATGTTCGCCAGGTTGGAAAAAGACAGGAACTACAACTATTTCTGGGTTCGATCTGCAAAGCTTATGTTTGTGTGTCTGTTCACAGTTCATTTTGCTGGCTGCTGCTTCTATCTAATTGCTTCAAACTATAAGGACCCCAAAAGAACATGGTCGACCTTATACATGGAAGACTTCCATAATGAAAGTTTGTGGGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACCACCACTGGCTATGGCGATTTGCATCCAATCAATGATCAAGAGATGTCATTTGTCATTTGTTATCTGTTCTTCATTCTGGGGTTGCAATCTTACCTGATTGGAAATATGACAAACTTGGTCGTCCATGGCACGAGTCGAACCAGGCAATTTAGAGACACCATTCAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTGCCTGGTCGGCTGCAAGAACAGATGCTAGCTCATCTGTGTTTGAAATTCAGGATTGATTCAGAGGGTTTACAACAGCAAGAGACAATTGATTCTCTTCCAAAAGCCATTAGATCCGGCATCGCACACCATCTCTTCTATTCACTCGTTGATAGTGCTTATTTGTTCAATGGGGTGTCAACCGACTTGATCTTTCAACTGGTGACAGAAATGAAGGCTGAGTACTTTCCTCCCAAAGAAGACATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTTGTCACTGGCACTGCGGATCTTATTGTACAAAGAAATGGAATAGAAGAGATCGTCGGAGAAGCAAAGACAGGAGATGTCATTGGTGAGATTGGCGTGCTTTGTTATCAACCACAACTGTTTACAGTTCGAACCAGCCGTTTGAGTCAACTGTTGCGATTGAATCGCTCTTCGTTTTTCAACTTAGTACAAGCTAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGGTAAAAGACCCAATGATGGAGGAAATTCTGCAAGAAACAGAACAGTCCTTGATTCGTGCTGGAATGGAAATGCCTCTCAATTTATACTTTGCGGCAAGCAGTGGCGATGACTTGTTGTTGCATCAGTTGCTAAAGCGTGGTTCAAACCCAAATGAAGTAGATGAGGGTAGCGGGAAGACAGCACTTCATATTGCAGCTGCTAAAGGAAACGAACACTGCGTAGTTCTACTCCTAGAGTATGGGGCAGATCCGAACCGAAGAGACTTTGAAGGAAGCCTACCCTTGTGGCAAGCAATACAAGGAAATCATGAGCCTATAGTCAAGCTTCTAATAGACAATGGTGCCGATATTTCTTCAGGAGACGTCGCCCAGTTTGCATGCACCGCTGCGGAGCAAAACAACATAGATATGCTCAAATCCATCATCGAATGTGGTGGAGATGTAACTCTGCCTAGAAGCAACGGGACTACAGCTCTTCACACGGCAGTATGTGAAGGAAACAGTGAAATGGTTAAGTTCCTTTTAGAGCATGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCACGAGCGTTAGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTCTTAAGCAAGCTGTGAATAAATCATCTGTTGTCCATATTCCACAAAATCCCGAATCAAATTATCTACGGAAGTTCCAGAGCGAGTCGATCATACCGCGGTTTTCCCATGACTCCTGCATGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGAGAAGGAGCAATAATTATCGAAACTCGCTCGTTGGGTTCATGGAAAATACCAATAAGGGTGAAAGGGACGTTCTACAATCCGCATTGCTCGGTTTTAGCAATAGCCGAAGCGTGAGATCGGCTTACCAGGCAAGAGTTGTTCTCAGTTGCCCTGAGAAAGGACAAGTTATTGGAAAGCTTGTGCTTTTACCCAAAACCATCCAAGAACTAGTTGAAACTGGTTCCAAAAAATTTGGGATTTCTGCAACAATGATTTTAACTCATGAAGGAGCTGAAGTTGAGGATATAGACCTTGTCAGAGACGGTGATCACCTCATTCTTGTCGGTGACGCCAGTGCCGCCGTCCCGAGTGGCCAAGTACGGTAG 2640 44.89 MCGREDQRELEHLSRDDGSQYSLTGGILPPLGVNGRNNRRSKLGPHIISPFDYNYRFWETFLIFLVLYTAWACPFEFGFLPSPSGVLAIIDNIVNGLFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLVLDVVSNIPSEMARNILPPSLQVYGYFNMLRLWRLRRVSSMFARLEKDRNYNYFWVRSAKLMFVCLFTVHFAGCCFYLIASNYKDPKRTWSTLYMEDFHNESLWVRYVTSIYWSIVTITTTGYGDLHPINDQEMSFVICYLFFILGLQSYLIGNMTNLVVHGTSRTRQFRDTIQAASNFAQRNQLPGRLQEQMLAHLCLKFRIDSEGLQQQETIDSLPKAIRSGIAHHLFYSLVDSAYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIVVTGTADLIVQRNGIEEIVGEAKTGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEVKDPMMEEILQETEQSLIRAGMEMPLNLYFAASSGDDLLLHQLLKRGSNPNEVDEGSGKTALHIAAAKGNEHCVVLLLEYGADPNRRDFEGSLPLWQAIQGNHEPIVKLLIDNGADISSGDVAQFACTAAEQNNIDMLKSIIECGGDVTLPRSNGTTALHTAVCEGNSEMVKFLLEHGADIDKADVHGWTPRALADHQGHEEIKELFSLKQAVNKSSVVHIPQNPESNYLRKFQSESIIPRFSHDSCMTPVRESNCSDMPPRRRRSNNYRNSLVGFMENTNKGERDVLQSALLGFSNSRSVRSAYQARVVLSCPEKGQVIGKLVLLPKTIQELVETGSKKFGISATMILTHEGAEVEDIDLVRDGDHLILVGDASAAVPSGQVR 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2166992 2172257 + CmoCh09G004790.1 Cmo09g00479 388481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00479 879 CDD CAP_ED 373 476 IPR000595 -
Cmo09g00479 879 ProSiteProfiles Ankyrin repeat region circular profile. 552 583 - -
Cmo09g00479 879 SUPERFAMILY Ankyrin repeat 523 702 IPR036770 -
Cmo09g00479 879 SMART ANK_2a 649 678 IPR002110 GO:0005515
Cmo09g00479 879 SMART ANK_2a 518 547 IPR002110 GO:0005515
Cmo09g00479 879 SMART ANK_2a 616 645 IPR002110 GO:0005515
Cmo09g00479 879 SMART ANK_2a 552 581 IPR002110 GO:0005515
Cmo09g00479 879 SMART ANK_2a 585 614 IPR002110 GO:0005515
Cmo09g00479 879 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Cmo09g00479 879 PRINTS Ankyrin repeat signature 665 679 IPR002110 GO:0005515
Cmo09g00479 879 PRINTS Ankyrin repeat signature 553 568 IPR002110 GO:0005515
Cmo09g00479 879 SMART cnmp_10 373 490 IPR000595 -
Cmo09g00479 879 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
Cmo09g00479 879 ProSiteProfiles Ankyrin repeat profile. 649 681 IPR002110 GO:0005515
Cmo09g00479 879 PRINTS EAG/ELK/ERG potassium channel family signature 102 111 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo09g00479 879 PRINTS EAG/ELK/ERG potassium channel family signature 285 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo09g00479 879 PRINTS EAG/ELK/ERG potassium channel family signature 241 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo09g00479 879 PRINTS EAG/ELK/ERG potassium channel family signature 91 101 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo09g00479 879 PRINTS EAG/ELK/ERG potassium channel family signature 68 75 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo09g00479 879 Gene3D - 56 294 - -
Cmo09g00479 879 Pfam Ankyrin repeats (3 copies) 624 702 IPR002110 GO:0005515
Cmo09g00479 879 Pfam Ankyrin repeats (3 copies) 523 614 IPR002110 GO:0005515
Cmo09g00479 879 Gene3D Jelly Rolls 341 511 IPR014710 -
Cmo09g00479 879 ProSiteProfiles KHA domain profile. 803 879 IPR021789 -
Cmo09g00479 879 ProSiteProfiles Ankyrin repeat region circular profile. 649 680 - -
Cmo09g00479 879 Pfam KHA, dimerisation domain of potassium ion channel 803 865 IPR021789 -
Cmo09g00479 879 Pfam Cyclic nucleotide-binding domain 393 477 IPR000595 -
Cmo09g00479 879 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 6 870 - -
Cmo09g00479 879 Pfam Ion transport protein 56 300 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo09g00479 879 ProSiteProfiles Ankyrin repeat region circular profile. 585 616 - -
Cmo09g00479 879 SUPERFAMILY Voltage-gated potassium channels 50 294 - -
Cmo09g00479 879 ProSiteProfiles cAMP/cGMP binding motif profile. 373 475 IPR000595 -
Cmo09g00479 879 SUPERFAMILY cAMP-binding domain-like 298 493 IPR018490 -
Cmo09g00479 879 Gene3D - 520 704 IPR036770 -
Cmo09g00479 879 PANTHER POTASSIUM CHANNEL AKT1 6 870 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00479 Cmo-Chr9:2166992 Cmo10g00620 Cmo-Chr10:2810905 0 dispersed
Cmo11g00553 Cmo-Chr11:2690138 Cmo09g00479 Cmo-Chr9:2166992 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00479 K21867 - csv:101217334 1362.82