Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00481 ATGGCTCGTCAGGGCGCCGATTCCAATGCTGGCTACTGCAGCAATGGTGAGGAGGAGAAGAGTACGAGACAGGTTCAACAGCTAGAAAATCAGGTGGGAGATTATCTTGAAGGAGTTCCATTCTACAGTCCGAGGAATGAAATTTCTGGACCTGAAAATAGAAACCGAATAGCAGGGATCAAACGAAGTAATCCAGATTCTGCTTTCATGGAGTCATATAGAAACCAAATTCCTCATATTCTACAAAACGGAGCTGGTGGAGATCGACCAAGATACAACGATAATGATGCGGTTTACAGTATGCAGCCACCAAGAATTGCTTCTTCTTCACTCACACAACTCTCTCCTGGCACTAGATCTAATCCTAGCGTTTCCAAATGGGAGAGGCCTATTCCGTTGAACATGAGTTTTGCACCAAATTCTCCACTTGGGAGTCAGTATGTGCCGCGTGTTCATCAAGTAGCTTCCAATTCTTCCAGAGATTTTAATGTTTCTCCTTCCAGTATTTCTCAGTCTGCTGCTGATGAAGGATCTAGAACTGGGATGAAAACCCCTGGACTTCTAAGTAGCTTTAATGGCGGACACGATGGGATGCACTCATATAAGATGTTGCTAGGTTGTGACAAGCAGAAAACCAAGACTGAAGGTTTAGCATACAAATCTTCGAACCCTCCAAGTCAGCAGGGTGTTGATTCTAACAACAGACAGATGACTATTTTCTATGGTGGTCAAGCTCATGTTTTTGACGATGTCCATCCAAACAAGGCTGATATTATAATGGCCTTAGCAGGATCAAATGGGGGATCTTGGTCAACAACCTTGGCACCTAAACTGAATGTAACTGGGATATCTAGTGACCAGGAATCAGCTCATGGAAAGTTATTTCATAGTTTGATATCCACCAGTCGAGGAGTCGGCGATATTCCTATCTCGACGCAAGCAGCTGTTGGTGATCGTGCAGCGAAAGAGACCCGAGAACCTTGCTTGTTTTTGCAAATAGAAGTCGATTATACGACAACGATGGCTTTCGTTCCATCCCCGTCCAACCGTCACCATTCTCGTGCCTTTTGTTCGCAACAACCGACCAGGATGATCATCATGCAGCAAGAGAGAATTATTCACGTCGATCATAGCGATCGGCAAGTCGCCATTGATGTGATTTGGAGATGTTTATAG 1176 44.56 MARQGADSNAGYCSNGEEEKSTRQVQQLENQVGDYLEGVPFYSPRNEISGPENRNRIAGIKRSNPDSAFMESYRNQIPHILQNGAGGDRPRYNDNDAVYSMQPPRIASSSLTQLSPGTRSNPSVSKWERPIPLNMSFAPNSPLGSQYVPRVHQVASNSSRDFNVSPSSISQSAADEGSRTGMKTPGLLSSFNGGHDGMHSYKMLLGCDKQKTKTEGLAYKSSNPPSQQGVDSNNRQMTIFYGGQAHVFDDVHPNKADIIMALAGSNGGSWSTTLAPKLNVTGISSDQESAHGKLFHSLISTSRGVGDIPISTQAAVGDRAAKETREPCLFLQIEVDYTTTMAFVPSPSNRHHSRAFCSQQPTRMIIMQQERIIHVDHSDRQVAIDVIWRCL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2176324 2180232 - CmoCh09G004810.1 Cmo09g00481 388483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00481 391 MobiDBLite consensus disorder prediction 1 25 - -
Cmo09g00481 391 ProSiteProfiles Tify domain profile. 230 265 IPR010399 -
Cmo09g00481 391 SMART tify_2 230 265 IPR010399 -
Cmo09g00481 391 MobiDBLite consensus disorder prediction 158 184 - -
Cmo09g00481 391 MobiDBLite consensus disorder prediction 8 25 - -
Cmo09g00481 391 MobiDBLite consensus disorder prediction 108 127 - -
Cmo09g00481 391 Pfam tify domain 233 264 IPR010399 -
Cmo09g00481 391 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 294 IPR040390 -
Cmo09g00481 391 PANTHER PROTEIN TIFY 8 20 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00481 - - - cmos:111443130 662.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00678 Cmo09g00481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01575 Cmo-Chr1:12096153 Cmo09g00481 Cmo-Chr9:2176324 2.14E-123 dispersed
Cmo05g00678 Cmo-Chr5:3438221 Cmo09g00481 Cmo-Chr9:2176324 9.17E-72 dispersed
Cmo09g00481 Cmo-Chr9:2176324 Cmo04g01093 Cmo-Chr4:5537944 9.74E-06 dispersed
Cmo01g01574 Cmo-Chr1:12093590 Cmo09g00481 Cmo-Chr9:2176324 1.15E-20 wgd
Cmo12g00259 Cmo-Chr12:1679464 Cmo09g00481 Cmo-Chr9:2176324 1.45E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g432 . . . . . . . . Cmo05g00678 . . Cma05g00647 Car09g00417 . . . Cpe06g00353 . . . . . . . Cla05g01757 Cam05g1871 Cec05g1884 Cco05g1947 Clacu05g1863 Cmu05g1744 Cre05g1874 . . . . . Csa03g04357 . . . . . . . . . . . . Cmo09g00481 Cma09g00475 . . . Cpe11g00571 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001357 2 5 2 1 0 2 5 2 2 2 2 2 4 2 2 5 2 2 4 2 2 1 2 2 2 2 1 7 3 1 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10353 PF06200 tify 2.10E-14 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00481 Cmo_Chr09 FPKM 10.596288 13.263756 21.215698 20.560665 10.128378 7.79389 10.725368 29.109005 30.701778 35.948772