Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00498 ATGTCCGCTTCATCCGAAACTCCGATCGATGAGCCCCTGTCTGCTGGTGACGAAGCATCTAAAGCTGTCAGCAAGAAGGCCGCCAAGAAGGAGGCTGCCAAGCTGGAAAAGTTGCGCCGTCGCCAGGAAGCTGCCGCCGAAGCTGCTATTTCGTCTCTCAATGTCGAGGACGACCCACTCTCCGCTAACTATGGCGATGTACCTCTCTCCGATCTTCAATCCAAGGAGGCTAAGGATGTCGCGAACTGGACTCAGGTTGGCTCTTTGACGGGGGAGCTTAAAGACAAGTATGTGATTCTACGGGGACGAATTCAGACGATCCGTGCTGTTGCCAAGAAGATGGCGTTTCTCGTGGTGAGAGAAAAGGGATTCACCGTGCAGTGCGTTGTATCGGAGCAGCCGGAACTCGTCAGTCGCCAGATGGTGAAGTATGTCGTTGGATTGAGCCGTGAATCCATTGTCGACGTTGAAGGAGTCGTGTCTGTGCCCAATGTTGCCATTAAAGGTGCTACGCAGCAGGTGGAGATTCAAGTGAGGAAAGTATACTGCATCAGTAAGGCAATGCCGAGTCTGCCTATAAATATTGAGGATGCTGCCCGTAGTGAAGCTGAGATTGAAAAAGCGTTGCAGATATTTCGACAATTTCTGTTGTCCGAAGGCTTTGTTGAAATCCATACACCAAAATTGATTGGGGGTTCCAGTGAAGGTGGTGCTTCTGTATTTAGGTTGGACTACAAAGGTCAACCCGCTTGCCTGGCTCAGTCACCTCAGCTTCATAAGCAAATGTCAATCTGCGGCGACTTCGGCCGTGTATTTGAGATTGGTCCTGTTTTCAGAGCAGAGGACTCATTCACACATAGACATTTATGTGAATTTACAGGACTTGATGTTGAAATGGAGATCAAAACCCATTATTCTGAGGTCATGGACATCGTGGACCGATTATTTGTCTCAATGTTCGACAGTATGAATCAAAACTGTAAGAAGGAGCTTGAAGCAATTGATAAACAGTATCCCTTTGAGCCTTTGAAGTACTTGCGAAACACTCTACGCCTTACATTTGAGGAAGGAATTCAGATGTTGAAGGATGCTGGCGTTGAAATCGATCCTCTCGGGGATCTTAATACAGAGGCTGAGAGGAAATTGGGACGACTCGTCCTAGAGAAGTATGGCACAGAGTTCTACATTCTTCACCGCTATCCTTTGTCTGTTAGGCCATTCTACACTATGCCTTGCCATGATAACCCAACTTACAGTAACTCATTTGATGTCTTTATTCGAGGGGAAGAAATCATTTCTGGGGCTCAGCGTGTTCACGTGCCAGAATTTCTTACAGAACGCGCTCAAGCATGTGGGATCGATGTAAAAACCATAGAAACTTACATCGATTCGTTTAGGTATGGCGCTCCCCCACACGGTGGATTCGGAGTAGGTTTGGAGCGTGTAGTGATGCTTTTTTGTGGTTTGAATAACATTCGGAAAACATCATTGTTCCCTCGCGACCCACAGAGGATTGCTCCTTAG 1524 47.38 MSASSETPIDEPLSAGDEASKAVSKKAAKKEAAKLEKLRRRQEAAAEAAISSLNVEDDPLSANYGDVPLSDLQSKEAKDVANWTQVGSLTGELKDKYVILRGRIQTIRAVAKKMAFLVVREKGFTVQCVVSEQPELVSRQMVKYVVGLSRESIVDVEGVVSVPNVAIKGATQQVEIQVRKVYCISKAMPSLPINIEDAARSEAEIEKALQIFRQFLLSEGFVEIHTPKLIGGSSEGGASVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKTHYSEVMDIVDRLFVSMFDSMNQNCKKELEAIDKQYPFEPLKYLRNTLRLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGRLVLEKYGTEFYILHRYPLSVRPFYTMPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLTERAQACGIDVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2315772 2320006 + CmoCh09G004980.1 Cmo09g00498 388500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00498 507 Gene3D Bira Bifunctional Protein; Domain 2 192 507 IPR045864 -
Cmo09g00498 507 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 209 507 - -
Cmo09g00498 507 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 16 204 - -
Cmo09g00498 507 CDD AspRS_cyto_N 97 197 - -
Cmo09g00498 507 Pfam tRNA synthetases class II (D, K and N) 207 501 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo09g00498 507 CDD AsxRS_core 200 503 - -
Cmo09g00498 507 SUPERFAMILY Class II aaRS and biotin synthetases 206 506 IPR045864 -
Cmo09g00498 507 Coils Coil 25 48 - -
Cmo09g00498 507 SUPERFAMILY Nucleic acid-binding proteins 62 189 IPR012340 -
Cmo09g00498 507 PANTHER ASPARTYL-TRNA SYNTHETASE 209 507 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cmo09g00498 507 PANTHER ASPARTYL-TRNA SYNTHETASE 16 204 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cmo09g00498 507 MobiDBLite consensus disorder prediction 1 26 - -
Cmo09g00498 507 PRINTS Aspartyl-tRNA synthetase signature 422 438 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo09g00498 507 PRINTS Aspartyl-tRNA synthetase signature 252 264 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo09g00498 507 PRINTS Aspartyl-tRNA synthetase signature 462 476 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo09g00498 507 PRINTS Aspartyl-tRNA synthetase signature 269 282 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo09g00498 507 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 81 507 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cmo09g00498 507 Gene3D - 56 190 IPR012340 -
Cmo09g00498 507 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 210 499 IPR006195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00498 K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101222217 898.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00730 Cmo-Chr5:3809275 Cmo09g00498 Cmo-Chr9:2315772 1.02E-14 dispersed
Cmo09g00498 Cmo-Chr9:2315772 Cmo11g01011 Cmo-Chr11:5437884 4.30E-27 dispersed
Cmo01g01594 Cmo-Chr1:12233610 Cmo09g00498 Cmo-Chr9:2315772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00498 Cmo_Chr09 FPKM 49.978218 52.679096 40.385082 41.973778 51.296074 54.041252 49.803383 57.854614 55.543354 60.10984