Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00511 ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCTTCTCAGACCAATGACTCTTCTTCGGCGAAGAATCGAGAAACGCCGGGCCTGGTTCCGGCAACTGTAAAACAGATAAGCGAAGCTTCCCATTCTGGCGAAGAGAAGGCCAACTTCGTAATCAACGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAATGACACTTTCGACACCAAGCAAATGGATGAAATACAAGATGGAATGTATATACGGGTTAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTATTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACATGAGCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGAGTTGGATCGACACAGTTCCAATCCTCGGATTCAATTGTGAAGACTCCAATGCAGAATGGCTCGAGTGGATATCAGACAGCATCTTCAGTACTACCATCTGAGCAGCACACTGTTGATGTTAAGAAGAATTGTGATGACTTGATCCTCGACTATCTTCAGCTGCCCTCCAGCGTTGCCAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTAAAGATTCCAATGGAGAAAATACTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG 816 41.79 MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2374387 2378699 - CmoCh09G005110.1 Cmo09g00511 388513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00511 271 PANTHER REPLICATION PROTEIN A-RELATED 1 270 IPR040260 -
Cmo09g00511 271 Pfam Replication protein A C terminal 154 264 IPR014892 -
Cmo09g00511 271 SUPERFAMILY Nucleic acid-binding proteins 32 158 IPR012340 -
Cmo09g00511 271 MobiDBLite consensus disorder prediction 1 32 - -
Cmo09g00511 271 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 270 - -
Cmo09g00511 271 CDD RPA2_DBD_D 62 155 - -
Cmo09g00511 271 Pfam OB-fold nucleic acid binding domain 63 136 IPR004365 GO:0003676
Cmo09g00511 271 SUPERFAMILY Winged helix DNA-binding domain 206 269 IPR036390 -
Cmo09g00511 271 Gene3D - 29 160 IPR012340 -
Cmo09g00511 271 Gene3D - 203 271 IPR036388 -
Cmo09g00511 271 MobiDBLite consensus disorder prediction 1 29 - -
Cmo09g00511 271 PIRSF RPA32 1 271 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01597 Cmo09g00511 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00511 Cmo-Chr9:2374387 Cmo11g00386 Cmo-Chr11:1928502 4.73E-80 dispersed
Cmo01g01597 Cmo-Chr1:12247131 Cmo09g00511 Cmo-Chr9:2374387 2.28E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00511 K10739 - csv:101220176 491.5