Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00513 ATGACGGGATTAACATGTAATGCTTGTAACAAAGAATTTCTAGACGCCGAGGAGCAAAAGCTTCACTACAAGTCCGAATGGCATCGATACAATCTTAAGCGCAAGGTAGCTAATGTTCCTGGGGTGACAGAGGCATTATTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAGAGAGACCTCGATGCTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACACTATCCGGGTTTCGCAAGGAACACATGATCAAGAAGTTGAAAAACCAATAATTAAGCCCCTTCCTCAGCGGATTTCCAATAAGGAACCCCAACAGAGTGAGGAGGAAGAGAGTGAGGAGGAGTGGGAAGAAGTTAATCCTGACGAAGAAATGATCGATGAGGGTGAGGATGAGGACGATGATATTGATGCCATTGAAGTGGACTTCGATCCATCATGCTGCTTCATGTGTGATCTAAAGCACGACACCGTTGATAATTGCATGGTCCACATGCATAAGCAACATGGATTCTTTATTCCTGATGTTGAATATTTGAAGGATCCAAAAGGCTTCCTTACATACCTCGGTCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATCGTCTTCCTTTTAGCTGCTTGGAAGCTGTTAGGAAGCACATGGAAGCAAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGACGAGAACGAAGAAGTAGAATTGGAGGAATTTTATGATTACAGTAGCAGTTATGTGGATGGAAGCAACCAGCTGGTACAATCAGGGGCTGGGGACAATTCTGTAGAACTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAAGAACTAACGATCGACAATCGACCAAAACACTTGGTTCTAGACAATTTCTACGTTATTATCGTCAAAAGCCTCGACCGTCTCCTGCAAATGATGCGCTCTTAACTGCTGTATTGGCAGCAAGGTACAGGAGCATGGGATTAGCGACTGTCCAGTCAAGAGAAACGATGATCAGGATGAAGGTGATGAAAGAAATGAATCGAACCGGGTTGGAAGCTATGCGTACTAAGATCGGATTGAAGAACAACGTAATCCGAAACCTGCCAAAGAATGTACCACACTAG 1179 44.11 MTGLTCNACNKEFLDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHTIRVSQGTHDQEVEKPIIKPLPQRISNKEPQQSEEEESEEEWEEVNPDEEMIDEGEDEDDDIDAIEVDFDPSCCFMCDLKHDTVDNCMVHMHKQHGFFIPDVEYLKDPKGFLTYLGLKVMRDFRCLYCNDNRLPFSCLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSNQLVQSGAGDNSVELGSGGAELILVQRTNDRQSTKTLGSRQFLRYYRQKPRPSPANDALLTAVLAARYRSMGLATVQSRETMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPH 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2386258 2389216 - CmoCh09G005130.1 Cmo09g00513 388515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00513 392 MobiDBLite consensus disorder prediction 126 148 - -
Cmo09g00513 392 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Cmo09g00513 392 MobiDBLite consensus disorder prediction 89 148 - -
Cmo09g00513 392 MobiDBLite consensus disorder prediction 96 110 - -
Cmo09g00513 392 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Cmo09g00513 392 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676|GO:0008270
Cmo09g00513 392 Pfam C2H2 type zinc-finger (2 copies) 167 268 IPR041661 -
Cmo09g00513 392 SUPERFAMILY beta-beta-alpha zinc fingers 150 203 IPR036236 -
Cmo09g00513 392 SUPERFAMILY beta-beta-alpha zinc fingers 68 100 IPR036236 -
Cmo09g00513 392 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cmo09g00513 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 94 IPR013087 -
Cmo09g00513 392 PANTHER ZINC FINGER PROTEIN-RELATED 1 391 - -
Cmo09g00513 392 SMART c2h2final6 4 28 IPR013087 -
Cmo09g00513 392 SMART c2h2final6 216 243 IPR013087 -
Cmo09g00513 392 SMART c2h2final6 69 93 IPR013087 -
Cmo09g00513 392 SMART c2h2final6 165 188 IPR013087 -
Cmo09g00513 392 PANTHER ZINC FINGER PROTEIN 622 1 391 IPR040025 -
Cmo09g00513 392 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01596 Cmo09g00513 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01077 Cmo-Chr9:5836014 Cmo09g00513 Cmo-Chr9:2386258 6.84E-06 transposed
Cmo01g01596 Cmo-Chr1:12242133 Cmo09g00513 Cmo-Chr9:2386258 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00513 K14816 - csv:101219700 658.677