Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00514 ATGGCTTCAATGGCGGCGTGGTTGATCGGAATAATAATCGTACTCTGCCAAGTCTCCACGCCATCGGCGCAGGGCGGCGGTGGCGGAAATCCAATGTCCATCGTAATCGCTTTCTCGGTGGTTGGCTCTGTGGTTGGATTGCTCATTCTCGTGGCGATTGGCATATTCTCTTACAAATTTGCCAAGAAAGTTGTAAGAGAATGGAGAAACACATCGATTCCACCGCCGGATCTGGAATCGGCGCCGGTAGAGATTTTGGAAAAAGATGCATCGGAAATGGATAGATTCCTCCGAGAAATCGCCGACGAATATCCGATTAGATTCACCGCTCAGCAACTCAACGTCTTCACGAACAACTACGCAACGCGCCTAGGATCCGGCGGCTTCGGCGATGTTTACAAAGGTCAGTTCCCAAACGGATTGAAGATCGCAGTGAAGATTCTCAAGAGAAACTCCGACAAAAAAGCTGAAAATCAATTCATGGCGGAAATCGGAACAATCGGCAGAACGCGGCATCGAAATCTTCTCAGGATGTACGGATTCTGTTACGACGAATTCATGAGCGCGCTGGTTTTGGAGTACATGGAGAACGGATCGCTCGACAGATTCTTGTACGGAAAAACCAGGAACGAAATCGTTTGGGAGAAATTGCAGGAAATCGCGATCGGAACCGCTAGAGGAATCGCGTATTTACATGAAGAATGCCATAGAAGAATCATCCATTACGATATCAAACCTGCGAACATTCTATTAGATGCGGATTTCTCACCGAAGATCGGCGATTTCGGACTTGCGAATCTCTGCAACAAAGACAACACACACGTATCTCTCACAGAATATCGAGGAACTCCGGGATTTTCGGCACCGGAGCTCCTGAGATTCAATTTTCCGGTGACTTTCAAGTGCGATGTATACAGTTTTGGAATGGTGCTGTTTGAGATGATTGGAAGGAGGAAGAACGCCGAAGTCAGTCCGTCCGGGAGCATCGATTGGTTTCCGATTCAGGTATGGGAGCAGTTCGACAAGGGCGAATTAGTGAATATGAGCGGTGAATGTAATGTTGAAGAGGATGGAGAGAGGAAAATGGCGATTGAGAGAATGTGTATGGTGGCTCTCTGGTGCGTACAGGACACGCCGGAGGATCGACCTCCAATGTCGGCGGTGGTAAAGATGTTGGAAGGGAGCGCTGAAATAACACCGCCGCCGAAGCCGTTTCAATATATGTATCCGATTTCCACAGATACAAGCGCCGTCACCGCCGTCACCACCGTCACCACCGTCACCACCGTCACCGTCGCCATGGATTCCGAGCAAATGAGCTCTGGTTCGACTCCGAGTCCGATTTGGTACAAGGGCTCTGTCCCTATTTTGAGAACTTAA 1380 49.13 MASMAAWLIGIIIVLCQVSTPSAQGGGGGNPMSIVIAFSVVGSVVGLLILVAIGIFSYKFAKKVVREWRNTSIPPPDLESAPVEILEKDASEMDRFLREIADEYPIRFTAQQLNVFTNNYATRLGSGGFGDVYKGQFPNGLKIAVKILKRNSDKKAENQFMAEIGTIGRTRHRNLLRMYGFCYDEFMSALVLEYMENGSLDRFLYGKTRNEIVWEKLQEIAIGTARGIAYLHEECHRRIIHYDIKPANILLDADFSPKIGDFGLANLCNKDNTHVSLTEYRGTPGFSAPELLRFNFPVTFKCDVYSFGMVLFEMIGRRKNAEVSPSGSIDWFPIQVWEQFDKGELVNMSGECNVEEDGERKMAIERMCMVALWCVQDTPEDRPPMSAVVKMLEGSAEITPPPKPFQYMYPISTDTSAVTAVTTVTTVTTVTVAMDSEQMSSGSTPSPIWYKGSVPILRT 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2390070 2391830 + CmoCh09G005140.1 Cmo09g00514 388516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00514 459 SUPERFAMILY Protein kinase-like (PK-like) 108 432 IPR011009 -
Cmo09g00514 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cmo09g00514 459 PANTHER RUST RESISTANCE KINASE LR10-RELATED 90 414 IPR045874 GO:0004672
Cmo09g00514 459 Gene3D Phosphorylase Kinase; domain 1 93 194 - -
Cmo09g00514 459 ProSiteProfiles Protein kinase domain profile. 118 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00514 459 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
Cmo09g00514 459 PANTHER RECEPTOR SERINE/THREONINE KINASE 90 414 - -
Cmo09g00514 459 Gene3D Transferase(Phosphotransferase) domain 1 195 399 - -
Cmo09g00514 459 SMART serkin_6 118 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00514 459 Pfam Protein kinase domain 122 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00514 - - - csv:101213257 695.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01610 Cmo-Chr1:12297036 Cmo09g00514 Cmo-Chr9:2390070 1.89E-175 dispersed
Cmo09g00514 Cmo-Chr9:2390070 Cmo09g00467 Cmo-Chr9:2091717 7.43E-77 dispersed
Cmo01g01609 Cmo-Chr1:12293258 Cmo09g00514 Cmo-Chr9:2390070 1.42E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74563 PF00069 Pkinase 5.70E-46 CL0016 Cmo PK