Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00518 ATGGTTAGCTTCTCCTGTATCTTATCGGCACTTACAACCACCATTGGAGAAGATGCTATGGATTGTGTCATTCTCCTCTCGTCATTTGGCATGGAATCCATCCGACTCAATGAACGTATTTTCTTGTTCACTTCCTTCTCGCACGGCCGACGCCCGGCGTCGGATAGACTCTCCCCGGAGTCCCAATCTCAAGCGGCTGACCTCTCGTGTCGTCAGACTCACCCGTCGGAAGCAGCTTCACCAGGTTTTACTCGTTTCTGCTCTTTATTCACTTCAATCTACACTCATCTCGACTGTTTGTTCATATTTGAGGAAATCGAAATTGCCAAGAGACGTTATGGAAAGCTGAATACAATTGTTATGAATGCGGTCCTGGAAGCTTGTGTTCACTGCGGTGATATTGATTTAGCTCTGAGGACTTTTAATGAAATGTCAAAGCCAGACAATTGTGGTTTAGACAACGTCAGTTATGGCACGCTATTAAAGGGTTTGGGTGAAGCTCGCAAGATTGATGAAGCATTTCAATTACTTGAATCTGTGGAAGAAGGTACTGCGATTGGAAGTCCAACATTGTCCGCACCACTTATTTATGGTGTTCTAAATGCTTTAACCGAAGCAGGAGACATGCGCCGTGCCAATGGTCTAATAGCACGATATGGATTCTTACTTCATGAAGGAGGCAATCTCTCTATATCAGTTTACAACTTATTGATGAAGGGGTACATAAGCTCTGGTGTTCCTCAAGCTGCTTTAGCTCTGTACAATGAGATGCTAAATCTGGAGTTGAAACCTGATAAGCTTACATATAATACATTAATCTCTGCTTGTGTGAAGATCAACAAACTGGACGCAGCAATGTATTTCTTTGAGGAAATGAAGGAACGAGCTGGTAAGTATAATCAGGAAGATATTTTTCCTGATGTTGTGACGTACACTACTTTACTTAAGGTCAGTGAACTTTTCACCTGTTCTGCTTATCATGGTTTTGGGATTCTGAAAGATGTCCGTCTTGTTCACAAAATTGTGCTGGAAATGAAGACTTGTCATGATTTGTTGATTGATCGAACAGCATACACTGCAATGATTGATGCTTTGGTTAACTGTGGCTCTATAAACGGTGCTCTTTCTTTATTTGGGGAATTATTGAAGCTTTCTGGATGA 1161 41.95 MVSFSCILSALTTTIGEDAMDCVILLSSFGMESIRLNERIFLFTSFSHGRRPASDRLSPESQSQAADLSCRQTHPSEAASPGFTRFCSLFTSIYTHLDCLFIFEEIEIAKRRYGKLNTIVMNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKIDEAFQLLESVEEGTAIGSPTLSAPLIYGVLNALTEAGDMRRANGLIARYGFLLHEGGNLSISVYNLLMKGYISSGVPQAALALYNEMLNLELKPDKLTYNTLISACVKINKLDAAMYFFEEMKERAGKYNQEDIFPDVVTYTTLLKVSELFTCSAYHGFGILKDVRLVHKIVLEMKTCHDLLIDRTAYTAMIDALVNCGSINGALSLFGELLKLSG 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2411434 2418695 - CmoCh09G005180.1 Cmo09g00518 388520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00518 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 183 IPR002885 -
Cmo09g00518 386 PANTHER OS09G0431600 PROTEIN 96 386 IPR044781 -
Cmo09g00518 386 Pfam PPR repeat family 231 278 IPR002885 -
Cmo09g00518 386 Pfam PPR repeat family 117 164 IPR002885 -
Cmo09g00518 386 TIGRFAM PPR: pentatricopeptide repeat domain 155 179 IPR002885 -
Cmo09g00518 386 TIGRFAM PPR: pentatricopeptide repeat domain 357 383 IPR002885 -
Cmo09g00518 386 TIGRFAM PPR: pentatricopeptide repeat domain 233 265 IPR002885 -
Cmo09g00518 386 TIGRFAM PPR: pentatricopeptide repeat domain 268 295 IPR002885 -
Cmo09g00518 386 TIGRFAM PPR: pentatricopeptide repeat domain 121 145 IPR002885 -
Cmo09g00518 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 386 IPR002885 -
Cmo09g00518 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Cmo09g00518 386 Gene3D Tetratricopeptide repeat domain 80 220 IPR011990 GO:0005515
Cmo09g00518 386 Gene3D Tetratricopeptide repeat domain 221 385 IPR011990 GO:0005515
Cmo09g00518 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Cmo09g00518 386 Pfam PPR repeat 357 383 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00518 - - - csv:101218517 505.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00518 Cmo-Chr9:2411434 Cmo07g00019 Cmo-Chr7:105934 1.43E-10 dispersed
Cmo01g01618 Cmo-Chr1:12338263 Cmo09g00518 Cmo-Chr9:2411434 2.72E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g198 . . . . . . . . . . . . Car09g00456 . . . Cpe06g00392 . . . . . . . Cla05g01804 Cam05g1926 Cec05g1938 Cco05g2001 Clacu05g1918 Cmu05g1800 Cre05g1926 Cone4ag1857 Cone7ag1764 . . Lsi04g02196 Csa03g04406 . . . . . . . . . . Sed13g2091 . Cmo09g00518 . . . . . . Bhi09g02372 Tan01g3737 Cmetu04g2143 . Hepe01g2090 Mch11g0628 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00518 Cmo_Chr09 FPKM 0.302266 0.51065 0.0 0.0 0.366732 0.0 0.0 0.174379 0.0 0.0