Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00520 ATGGCGGTCGATCTAGTGAGTTTTCCTAAGATTGATGATCAGATGGTTATACAGGAAGCTGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCACAAGAAAACTTCAAACCATGGCGATTGCTCTGACCTAACCGATGCAACTGTTCTGAAGCTTAAGAAAGCGATCTCTCTCCTTAATCGGACTGGTCACGCTAGGTTCCGGCGAGGTCCGGTTTCTTTCTCCTTCTCATCGCCGATATCTGGTTCATTTCCTCATCTCTCTGTTCCTCAAGATCAGACGATGAGTCTCGCTCCTTCTCTGTTTACTTCGCCGGCAACGATTTCTGCTCCGCCGCAGGCGAATATCGTCTCTGCAGCGGCGAACTTGCCTCAGTCGCAGCCTCAGAGTTTGACTCTTGATTTCACCAGGCCGAATATTTTGAACCCTAACCCTAAGGGAACTGATTTAGAATTTTCTAAGGAAACCTTCAGCGTCTCTTCCAGTTCCCCTTTGAAGTCCTCTGCCATTACTGGAGACGGAAGCGTATCCAACGGAAAAGTAGGAACGGCCTTGTTTCTGGCACCGGCACCGACTGCTTCCGGTGGAAAACTGCCGCTCTCTGCGGAGGCGTGCAAGAAGAAGTGTCACGAACAAGATCATTCCGAAGATTTGTCCGGGATAATCTCTGGATCGAAATCTGGTTCCGGCAAGTGCCATTGCTCAAAGAAAAGAAAACATCGTATGAAGAAGACGATTCAAATCCCGGCTATTAGTTCGAAAATCGCCGACATTCCAACGGACGAGTTCTCGTGGAGGAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCGCGAGCATATTATAAGTGTAGCACGATGAGGGGATGTCCGGCAAGGAAGCACGTGGAGAGAAATCCGAAGGATCCGGCGATGTTGATTATTACGTATGAAGGGGAGCACCGCCATACGCCGAGCTCGTTGCTGGAAAATAGGGCCGCCGGAGTGTCTTTAGCTTTGGACTCAACTTGA 1029 49.27 MAVDLVSFPKIDDQMVIQEAASQGLKSMEHLIRLLSHKKTSNHGDCSDLTDATVLKLKKAISLLNRTGHARFRRGPVSFSFSSPISGSFPHLSVPQDQTMSLAPSLFTSPATISAPPQANIVSAAANLPQSQPQSLTLDFTRPNILNPNPKGTDLEFSKETFSVSSSSPLKSSAITGDGSVSNGKVGTALFLAPAPTASGGKLPLSAEACKKKCHEQDHSEDLSGIISGSKSGSGKCHCSKKRKHRMKKTIQIPAISSKIADIPTDEFSWRKYGQKPIKGSPYPRAYYKCSTMRGCPARKHVERNPKDPAMLIITYEGEHRHTPSSLLENRAAGVSLALDST 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2424703 2426450 - CmoCh09G005200.1 Cmo09g00520 388522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00520 342 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 332 IPR044810 GO:0003700
Cmo09g00520 342 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo09g00520 342 Gene3D WRKY domain 255 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo09g00520 342 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo09g00520 342 Pfam Plant zinc cluster domain 211 262 IPR018872 -
Cmo09g00520 342 SUPERFAMILY WRKY DNA-binding domain 262 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo09g00520 342 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo09g00520 342 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 9 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00520 Cmo-Chr9:2424703 Cmo20g00978 Cmo-Chr20:5451258 1.37E-62 dispersed
Cmo10g00394 Cmo-Chr10:1782511 Cmo09g00520 Cmo-Chr9:2424703 9.12E-75 dispersed
Cmo01g01620 Cmo-Chr1:12343923 Cmo09g00520 Cmo-Chr9:2424703 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10354 PF03106 WRKY 1.00E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00520 - - bhj:120087087 502.671