Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00520 | ATGGCGGTCGATCTAGTGAGTTTTCCTAAGATTGATGATCAGATGGTTATACAGGAAGCTGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCACAAGAAAACTTCAAACCATGGCGATTGCTCTGACCTAACCGATGCAACTGTTCTGAAGCTTAAGAAAGCGATCTCTCTCCTTAATCGGACTGGTCACGCTAGGTTCCGGCGAGGTCCGGTTTCTTTCTCCTTCTCATCGCCGATATCTGGTTCATTTCCTCATCTCTCTGTTCCTCAAGATCAGACGATGAGTCTCGCTCCTTCTCTGTTTACTTCGCCGGCAACGATTTCTGCTCCGCCGCAGGCGAATATCGTCTCTGCAGCGGCGAACTTGCCTCAGTCGCAGCCTCAGAGTTTGACTCTTGATTTCACCAGGCCGAATATTTTGAACCCTAACCCTAAGGGAACTGATTTAGAATTTTCTAAGGAAACCTTCAGCGTCTCTTCCAGTTCCCCTTTGAAGTCCTCTGCCATTACTGGAGACGGAAGCGTATCCAACGGAAAAGTAGGAACGGCCTTGTTTCTGGCACCGGCACCGACTGCTTCCGGTGGAAAACTGCCGCTCTCTGCGGAGGCGTGCAAGAAGAAGTGTCACGAACAAGATCATTCCGAAGATTTGTCCGGGATAATCTCTGGATCGAAATCTGGTTCCGGCAAGTGCCATTGCTCAAAGAAAAGAAAACATCGTATGAAGAAGACGATTCAAATCCCGGCTATTAGTTCGAAAATCGCCGACATTCCAACGGACGAGTTCTCGTGGAGGAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCGCGAGCATATTATAAGTGTAGCACGATGAGGGGATGTCCGGCAAGGAAGCACGTGGAGAGAAATCCGAAGGATCCGGCGATGTTGATTATTACGTATGAAGGGGAGCACCGCCATACGCCGAGCTCGTTGCTGGAAAATAGGGCCGCCGGAGTGTCTTTAGCTTTGGACTCAACTTGA | 1029 | 49.27 | MAVDLVSFPKIDDQMVIQEAASQGLKSMEHLIRLLSHKKTSNHGDCSDLTDATVLKLKKAISLLNRTGHARFRRGPVSFSFSSPISGSFPHLSVPQDQTMSLAPSLFTSPATISAPPQANIVSAAANLPQSQPQSLTLDFTRPNILNPNPKGTDLEFSKETFSVSSSSPLKSSAITGDGSVSNGKVGTALFLAPAPTASGGKLPLSAEACKKKCHEQDHSEDLSGIISGSKSGSGKCHCSKKRKHRMKKTIQIPAISSKIADIPTDEFSWRKYGQKPIKGSPYPRAYYKCSTMRGCPARKHVERNPKDPAMLIITYEGEHRHTPSSLLENRAAGVSLALDST | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2424703 | 2426450 | - | CmoCh09G005200.1 | Cmo09g00520 | 388522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00520 | 342 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 9 | 332 | IPR044810 | GO:0003700 | |
Cmo09g00520 | 342 | SMART | WRKY_cls | 264 | 324 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00520 | 342 | Gene3D | WRKY domain | 255 | 325 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00520 | 342 | Pfam | WRKY DNA -binding domain | 266 | 322 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00520 | 342 | Pfam | Plant zinc cluster domain | 211 | 262 | IPR018872 | - | |
Cmo09g00520 | 342 | SUPERFAMILY | WRKY DNA-binding domain | 262 | 323 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00520 | 342 | ProSiteProfiles | WRKY domain profile. | 259 | 325 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo09g00520 | 342 | PANTHER | WRKY TRANSCRIPTION FACTOR 17-RELATED | 9 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00520 | Cmo-Chr9:2424703 | Cmo20g00978 | Cmo-Chr20:5451258 | 1.37E-62 | dispersed | |
Cmo10g00394 | Cmo-Chr10:1782511 | Cmo09g00520 | Cmo-Chr9:2424703 | 9.12E-75 | dispersed | |
Cmo01g01620 | Cmo-Chr1:12343923 | Cmo09g00520 | Cmo-Chr9:2424703 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10354 | PF03106 | WRKY | 1.00E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00520 | - | - | bhj:120087087 | 502.671 |