Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00539 ATGCTCACGAACTCAGAGATGGTTCTCTCCCAGTTCTCTAAAATCAACATTTCTCTCTTTACTATACCAATCCATCGCAATTTTAGCGCATTTCCGGCCAATAAACCAATTATTGCGGCAACAGCAGCCCCCATTTTCACATCGACTTCATTCCAGTTGCCCAAATCCACTGTAACTCCGGCCGAACCAATTCCGATCACCGATTTTTCGGAATATCCGGAAGAAATCCAGTTATCCATATCCCCTGATAAGCTATTTGTGCCGCCGGAAACAGATATTTCCGGCGGCGGTGGTACGGGGCCGAGAATCTTGAAAGGGTCGAACATTGTATTAGGTCGGTACGCGAGGGATGCGCAGGTTTCTGAGGCGGATTTTGTGAAGAGTAGTGTGACAACTGAGGATTGCCCTTCTGATGGGCTTCCTGAATTTGCGCTTGTTGGGCGCTCGAATGTGGGGAAATCTTCGCTGTTGAACTCGCTTGTTCGGCGGAAGAAGCTTGCTCTTACCTCCAAGAAACCAGGAAAGACACAGTGCATAAACCACTTTCGAATTAACGATAGTTGGTACTTGGTCGATTTGCCGGGATACGGGTATGCAGCTGCACCACAGGAACTCCGAACGGATTGGAACAAGTTTACGAGGAACTATTTTCTGAATCGGTCGACGTTGGTTTCGGTTTTCCTTCTTATAGATGCAAGCATTCCTGCCAAACAAATTGATCTTGACTATGCTAGTTGGTTGGGTCAGAATCAGATTCCAATGACGATAATATTTACAAAATGTGACAAACGAAAGAAGAAAAAGAACGGTGGAAAACGACCCGAAGAAAACGTGAGCGACTTTCACGAACTGATAAGTGGTTTTTTCCAAACGACTCCGCCGTGGATCATGACTAGCAGTGTCACCCATCAGGGTCGGGATGAAATACTTCTACATATCGCTCAGCTGAGGAACTACTGGCTCAAGCACTGA 972 46.4 MLTNSEMVLSQFSKINISLFTIPIHRNFSAFPANKPIIAATAAPIFTSTSFQLPKSTVTPAEPIPITDFSEYPEEIQLSISPDKLFVPPETDISGGGGTGPRILKGSNIVLGRYARDAQVSEADFVKSSVTTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYAAAPQELRTDWNKFTRNYFLNRSTLVSVFLLIDASIPAKQIDLDYASWLGQNQIPMTIIFTKCDKRKKKKNGGKRPEENVSDFHELISGFFQTTPPWIMTSSVTHQGRDEILLHIAQLRNYWLKH 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2562010 2564902 - CmoCh09G005390.1 Cmo09g00539 388541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00539 323 TIGRFAM GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 123 313 IPR019987 GO:0005525
Cmo09g00539 323 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 139 319 IPR030393 GO:0005525
Cmo09g00539 323 Gene3D - 114 319 IPR027417 -
Cmo09g00539 323 CDD YihA_EngB 142 316 IPR030393 GO:0005525
Cmo09g00539 323 Pfam 50S ribosome-binding GTPase 143 260 IPR006073 GO:0005525
Cmo09g00539 323 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 68 320 - -
Cmo09g00539 323 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 68 320 - -
Cmo09g00539 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 319 IPR027417 -
Cmo09g00539 323 Hamap Probable GTP-binding protein EngB [engB]. 128 317 IPR019987 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00539 K03978 engB; GTP-binding protein - csv:101215737 547.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01642 Cmo09g00539 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00539 Cmo-Chr9:2562010 Cmo13g00007 Cmo-Chr13:132518 1.08E-25 dispersed
Cmo20g01017 Cmo-Chr20:6632929 Cmo09g00539 Cmo-Chr9:2562010 7.08E-101 transposed
Cmo01g01642 Cmo-Chr1:12463948 Cmo09g00539 Cmo-Chr9:2562010 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g337 Blo01g01709 . . . . Bpe02g00234 . Bma01g02486 . . Cma01g01594 . Car09g00481 . . . Cpe06g00416 . . . . . . . . . . . . . . . . . . Lsi04g02219 Csa03g04429 Chy04g00272 . . . . . . . . . Sed01g1228 Cmo01g01642 Cmo09g00539 Cma09g00549 . Car01g01213 . . Cpe02g00383 Bhi09g02412 Tan01g3773 Cmetu11g1083 . Hepe01g2113 Mch11g0651 . . . . . . . . . . . Cme04g00302
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005769 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00539 Cmo_Chr09 FPKM 9.851282 10.312014 0.708293 0.809803 16.810026 20.643797 17.487116 3.670831 3.063113 3.203156