Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00542 ATGGCGCGCGAATTTGGAGGAATATGCGCGGGTTTTCGGTCAATGGCGATGACGATGTTCAACTTTGCCATAGCGTTGGCTATGGTTTCCGGTGAGAGAAAAATGAAGCTCGAAACGGCGAGGTTGGACGGAGAAGGAGGTTCTGATGGATTGAATCTGATCCGAGGAGCTTTGAATTTCTTGTGGCAATCGGACAGAACGGGGTATCATCACGTTTGGCCTGAAATGGAATTTGGGTGGCAGATTGTATTGGGTTCTGTTATTGGATTTCTGGGTGCTGCATTTGGGAGTGTAGGAGGCGTTGGTGGTGGGGGAATTTATGTTCCTATGCTTAGTCTAATCATTGGGTTCGATCCAAAGTCATCCACAGCTATATCAAAATGTATGATTATGGGAGCATCGGTATCAACCGTCTACTATAATCTTAAGCTAAGACATCCAACACTTGATCTTCCTATCATTGACTATGATTTGGTGCTGCTTATCATGCCTATGCTCATGCTGGGCATCAGCATTGGGGTGGTTTTCAATGTCATATTTGCTGATTGGATGGTTACTGTCCTCCTCATCGTTCTCTTCTTAGCTACATCCACGAAATCGTTTCTTAAGGGAGTTGAAACTTGGAAGAAGGAAACTATAATGAAAACGGAGGCTGCTAGGCGTGCTGAATCAAATGATCTTCAAGCCAATACAGCATATGCTCCTCTTCCTAGTGGCCCGAGCCATCGGCCCGAAACAGACCCCGCTGATCGAGAGGTTCCAATGCTGAAGAATGTGTACTGGAAAGAAATGGGACTTCTTGTATTAGTTTGGGTTGCTTTCCTTGCGATCCAAATTATCAAGAAGCATTCACCCAATTGTTCATGGGAATACTGGCTACTCAACTTACTGCAGATACCAATTGCTTTTGGTGCATCTGGCTATGAGGCAGTTAGCTTGTACAAAGGACGGAGAAAAATTGCATCTCTGGGAAATGAGAAGACTAATTTTCAAGTTTACCAGCTTGTTCTATATTGCTTCTTGGGCATAGTGGCCGGAGTTGTTGGCGGCCTGCTTGGCCTTGGTGGAGGATTTATAATGGGACCCCTGTTTTTGGAGCTCGGCATTCCCCCGCAGGTATCGAGTGCTTCAGCAACCTTTGGAATGACATTCTCCTCGTCAATGTCCGTTATAGAATACTATCTACTAGACCGTTTTCCCGTTCCTTATGCTGTTTACTTCACCATTGTGGCCGCCATAGCTGCATTTGTTGGACAACACGTAATAAGAAAACTGATCAACTTGATTGGAAGAGCATCCTTAATTATCTTCATCTTGTCCTTCACAATATTCGTCAGTGCAATTTCTCTAGGTGGCGTTGGAATCTCGAAGACGATTGGACAAATTCAGCGTCACGAATACATGGGCTTCGAGAACTTGTGCAAATATGACGCATAA 1437 44.75 MAREFGGICAGFRSMAMTMFNFAIALAMVSGERKMKLETARLDGEGGSDGLNLIRGALNFLWQSDRTGYHHVWPEMEFGWQIVLGSVIGFLGAAFGSVGGVGGGGIYVPMLSLIIGFDPKSSTAISKCMIMGASVSTVYYNLKLRHPTLDLPIIDYDLVLLIMPMLMLGISIGVVFNVIFADWMVTVLLIVLFLATSTKSFLKGVETWKKETIMKTEAARRAESNDLQANTAYAPLPSGPSHRPETDPADREVPMLKNVYWKEMGLLVLVWVAFLAIQIIKKHSPNCSWEYWLLNLLQIPIAFGASGYEAVSLYKGRRKIASLGNEKTNFQVYQLVLYCFLGIVAGVVGGLLGLGGGFIMGPLFLELGIPPQVSSASATFGMTFSSSMSVIEYYLLDRFPVPYAVYFTIVAAIAAFVGQHVIRKLINLIGRASLIIFILSFTIFVSAISLGGVGISKTIGQIQRHEYMGFENLCKYDA 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2576555 2582217 + CmoCh09G005420.1 Cmo09g00542 388544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00542 478 Pfam Sulfite exporter TauE/SafE 340 445 IPR002781 GO:0016021
Cmo09g00542 478 Pfam Sulfite exporter TauE/SafE 87 214 IPR002781 GO:0016021
Cmo09g00542 478 PANTHER SULFITE EXPORTER TAUE/SAFE FAMILY PROTEIN 3 11 476 - -
Cmo09g00542 478 PANTHER CEREBLON 11 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00542 - - - csv:101214783 797.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01646 Cmo09g00542 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00542 Cmo-Chr9:2576555 Cmo13g00734 Cmo-Chr13:7283531 8.01E-39 dispersed
Cmo03g01181 Cmo-Chr3:9243147 Cmo09g00542 Cmo-Chr9:2576555 7.61E-119 transposed
Cmo01g01646 Cmo-Chr1:12485130 Cmo09g00542 Cmo-Chr9:2576555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g330 Blo01g01766 . . Bda03g00422 Bpe02g01195 Bpe02g00179 . . . . Cma01g01599 . Car09g00484 . . . Cpe06g00419 . . . . . . . . . . . . . . Cone4ag1534 Cone7ag1418 Cone17ag1108 . Lsi04g02226 Csa03g04438 Chy04g00262 . Blo17g00056 Blo18g00070 . Bda13g01314 Bpe14g00533 Bpe04g00388 . Bma02g00071 Sed13g2122 Cmo01g01646 Cmo09g00542 Cma09g00552 . Car01g01219 . . Cpe02g00379 Bhi09g02422 Tan01g3781 Cmetu04g1178 . Hepe01g2120 . . . . . . . . . . . . Cme04g00293
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001976 6 3 4 3 6 2 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 2 1 2 2 3 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00542 Cmo_Chr09 FPKM 1.913001 2.342043 14.070931 14.539046 4.139982 4.378333 5.512502 25.430387 29.580694 30.646738