Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00543 ATGGTTTTCTATTTCAAAGCCCGGCCTGACGTCGGTGATTACTCCATTTTCATGGGGCTCGACAAGTACGAGAACGAGGAGCTTATCAAATACGGCTTTCCCGAGGATATTTGGTTCCACGTAGACAAGATGTCATCTGCTCATGTTTATGTGAGACTGCAAAAAGGGCAGACCATTGATGATATTAGTGAAGGGTTGCTGGAGGATTGTGCTCAGCTTGTCAAGGCAAATTCCATTCAAGGAAACAAGGTAAACAACATTGATGTCGTGTATACACCTTGGTCCAATTTGAAGAAAACTGCTTCCATGGATGTTGGCCAAGTTGGTTTTTATAACCCCAAGATGGTCCGAACTGTAAGGGTGGAAAAACGGATCAACGACATCGTAAATAGATTGAACAGGACTAAAGTGGAAAGGAAGCCTGATTTGAAAGCACGTCTCTATCCACCCCTAAGTATGAAGTTCACGTGCATCCGAACTCGTAAAACAGTTTACAAGCACTTCGTTTTCCATTATACAGCCGAACGTGAAGCAGTGAATGCAGCTGAAAGAGCGGAGAGGAAGCAACACCTGAGAGAAAAGCAAATCTATTCGTCAGACATGGTGGTTTTGCTCGATGGTTTCCATAAAAAACGACGTGAGGAACTGGAAAGGTTAGAAAAAGAGAGGCAAGCAGAGTTAAGGAGCTACAAGGGTTTGATGGTCTCTGAGAAAATGACATCTAACAAACAGATTGCTGCAACAAGCAAATCGCTACAAGAGCTGGAGGACGATTTTATGTGA 783 43.42 MVFYFKARPDVGDYSIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYVRLQKGQTIDDISEGLLEDCAQLVKANSIQGNKVNNIDVVYTPWSNLKKTASMDVGQVGFYNPKMVRTVRVEKRINDIVNRLNRTKVERKPDLKARLYPPLSMKFTCIRTRKTVYKHFVFHYTAEREAVNAAERAERKQHLREKQIYSSDMVVLLDGFHKKRREELERLEKERQAELRSYKGLMVSEKMTSNKQIAATSKSLQELEDDFM 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2583226 2586369 + CmoCh09G005430.1 Cmo09g00543 388545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00543 260 PANTHER OS01G0750500 PROTEIN 172 260 - -
Cmo09g00543 260 PANTHER OS01G0750500 PROTEIN 1 145 - -
Cmo09g00543 260 Coils Coil 209 229 - -
Cmo09g00543 260 Pfam NFACT protein RNA binding domain 1 112 IPR008532 -
Cmo09g00543 260 PANTHER DUF814-RELATED 172 260 IPR039730 -
Cmo09g00543 260 PANTHER DUF814-RELATED 1 145 IPR039730 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00543 - - - csv:101214540 375.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01647 Cmo09g00543 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01647 Cmo-Chr1:12490753 Cmo09g00543 Cmo-Chr9:2583226 1.25E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g329 . Blo12g00762 . Bda03g00423 . Bpe02g00178 Bma04g00399 Bma01g02468 . . Cma01g01600 . Car09g00485 . . . Cpe06g00420 . . . . . . . . . . . . . . Cone4ag1533 Cone7ag1419 . . Lsi04g02228 Csa03g04439 Chy04g00261 . . . . . . Bpe04g00389 . . Sed05g1606 Cmo01g01647 Cmo09g00543 Cma09g00553 . Car01g01220 . . Cpe02g00378 Bhi09g02423 Tan01g3782 Cmetu04g0213 . Hepe01g2121 Mch11g0659 . . . . . . . . . . . Cme04g00292
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006906 2 1 2 2 2 1 2 1 0 1 1 1 2 1 0 2 1 2 2 0 1 1 1 0 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00543 Cmo_Chr09 FPKM 9.117585 10.278792 3.451783 3.387389 3.734634 4.219849 3.852485 0.758481 0.706447 0.908687